Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17105 and PS417_17110 overlap by 7 nucleotides PS417_17110 and PS417_17115 are separated by 188 nucleotides PS417_17115 and PS417_17120 are separated by 39 nucleotides
PS417_17105: PS417_17105 - spore coat protein, at 3,735,888 to 3,736,430
_17105
PS417_17110: PS417_17110 - spore coat protein, at 3,736,424 to 3,736,948
_17110
PS417_17115: PS417_17115 - ATPase, at 3,737,137 to 3,738,231
_17115
PS417_17120: PS417_17120 - protein kinase, at 3,738,271 to 3,739,563
_17120
Position (kb)
3737
3738
3739 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3736.476 kb on - strand at 3736.503 kb on + strand, within PS417_17110 at 3736.593 kb on + strand, within PS417_17110 at 3736.593 kb on + strand, within PS417_17110 at 3736.594 kb on - strand at 3736.594 kb on - strand, within PS417_17110 at 3736.639 kb on - strand, within PS417_17110 at 3736.865 kb on - strand, within PS417_17110 at 3736.894 kb on - strand, within PS417_17110 at 3736.931 kb on + strand at 3736.965 kb on - strand at 3736.965 kb on - strand at 3736.983 kb on + strand at 3736.984 kb on - strand at 3736.992 kb on - strand at 3737.074 kb on + strand at 3737.122 kb on - strand at 3737.244 kb on + strand at 3737.244 kb on + strand at 3737.245 kb on - strand at 3737.455 kb on - strand, within PS417_17115 at 3737.636 kb on - strand, within PS417_17115 at 3737.669 kb on - strand, within PS417_17115 at 3737.971 kb on + strand, within PS417_17115 at 3737.972 kb on - strand, within PS417_17115 at 3737.972 kb on - strand, within PS417_17115 at 3737.992 kb on + strand at 3737.992 kb on + strand, within PS417_17115 at 3738.060 kb on + strand, within PS417_17115 at 3738.083 kb on - strand, within PS417_17115 at 3738.083 kb on - strand, within PS417_17115 at 3738.276 kb on + strand at 3738.809 kb on - strand, within PS417_17120 at 3738.976 kb on + strand, within PS417_17120 at 3738.976 kb on + strand, within PS417_17120 at 3739.183 kb on + strand, within PS417_17120 at 3739.184 kb on - strand, within PS417_17120 at 3739.184 kb on - strand, within PS417_17120
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,736,476 - -2.4 3,736,503 + PS417_17110 0.15 -2.6 3,736,593 + PS417_17110 0.32 -3.9 3,736,593 + PS417_17110 0.32 +1.4 3,736,594 - -0.3 3,736,594 - PS417_17110 0.32 +3.2 3,736,639 - PS417_17110 0.41 -0.9 3,736,865 - PS417_17110 0.84 -1.0 3,736,894 - PS417_17110 0.90 -0.2 3,736,931 + +0.2 3,736,965 - -1.3 3,736,965 - -0.7 3,736,983 + +0.4 3,736,984 - -2.3 3,736,992 - +0.3 3,737,074 + -1.3 3,737,122 - -0.3 3,737,244 + -1.7 3,737,244 + +0.0 3,737,245 - -1.3 3,737,455 - PS417_17115 0.29 +0.6 3,737,636 - PS417_17115 0.46 -0.1 3,737,669 - PS417_17115 0.49 +0.2 3,737,971 + PS417_17115 0.76 -0.7 3,737,972 - PS417_17115 0.76 -0.5 3,737,972 - PS417_17115 0.76 -1.4 3,737,992 + +0.7 3,737,992 + PS417_17115 0.78 -1.1 3,738,060 + PS417_17115 0.84 +0.4 3,738,083 - PS417_17115 0.86 -1.3 3,738,083 - PS417_17115 0.86 -0.0 3,738,276 + -0.6 3,738,809 - PS417_17120 0.42 -2.2 3,738,976 + PS417_17120 0.55 -1.5 3,738,976 + PS417_17120 0.55 -0.7 3,739,183 + PS417_17120 0.71 +0.7 3,739,184 - PS417_17120 0.71 -1.6 3,739,184 - PS417_17120 0.71 +1.6
Or see this region's nucleotide sequence