Strain Fitness in Pseudomonas simiae WCS417 around PS417_16070

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16065 and PS417_16070 are separated by 65 nucleotidesPS417_16070 and PS417_16075 are separated by 381 nucleotides PS417_16065: PS417_16065 - 3-phytase, at 3,519,634 to 3,521,499 _16065 PS417_16070: PS417_16070 - TonB-dependent receptor, at 3,521,565 to 3,524,078 _16070 PS417_16075: PS417_16075 - diguanylate cyclase, at 3,524,460 to 3,525,374 _16075 Position (kb) 3521 3522 3523 3524 3525Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3521.162 kb on + strand, within PS417_16065at 3521.163 kb on - strand, within PS417_16065at 3521.476 kb on + strandat 3521.477 kb on - strandat 3521.477 kb on - strandat 3521.477 kb on - strandat 3521.477 kb on - strandat 3521.597 kb on - strandat 3521.656 kb on + strandat 3521.657 kb on - strandat 3521.812 kb on + strandat 3521.812 kb on + strandat 3521.972 kb on + strand, within PS417_16070at 3522.076 kb on + strand, within PS417_16070at 3522.077 kb on - strand, within PS417_16070at 3522.080 kb on + strand, within PS417_16070at 3522.081 kb on - strand, within PS417_16070at 3522.081 kb on - strand, within PS417_16070at 3522.518 kb on + strand, within PS417_16070at 3522.592 kb on + strand, within PS417_16070at 3522.673 kb on + strand, within PS417_16070at 3522.931 kb on + strand, within PS417_16070at 3523.111 kb on + strand, within PS417_16070at 3523.111 kb on + strand, within PS417_16070at 3523.111 kb on + strandat 3523.111 kb on + strand, within PS417_16070at 3523.112 kb on - strand, within PS417_16070at 3523.112 kb on - strand, within PS417_16070at 3523.240 kb on + strand, within PS417_16070at 3523.249 kb on + strand, within PS417_16070at 3523.249 kb on + strand, within PS417_16070at 3523.250 kb on - strand, within PS417_16070at 3523.264 kb on + strand, within PS417_16070at 3523.264 kb on + strand, within PS417_16070at 3523.267 kb on + strandat 3523.267 kb on + strand, within PS417_16070at 3523.267 kb on + strand, within PS417_16070at 3523.267 kb on + strand, within PS417_16070at 3523.292 kb on - strand, within PS417_16070at 3524.823 kb on + strand, within PS417_16075at 3524.824 kb on - strand, within PS417_16075at 3524.824 kb on - strand, within PS417_16075at 3524.934 kb on + strand, within PS417_16075

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,521,162 + PS417_16065 0.82 +1.2
3,521,163 - PS417_16065 0.82 -1.5
3,521,476 + -0.6
3,521,477 - -0.4
3,521,477 - -3.5
3,521,477 - +0.5
3,521,477 - -1.7
3,521,597 - -1.2
3,521,656 + -3.1
3,521,657 - +0.1
3,521,812 + -1.1
3,521,812 + -1.4
3,521,972 + PS417_16070 0.16 -3.9
3,522,076 + PS417_16070 0.20 -0.5
3,522,077 - PS417_16070 0.20 -0.8
3,522,080 + PS417_16070 0.20 -0.4
3,522,081 - PS417_16070 0.21 +0.8
3,522,081 - PS417_16070 0.21 +1.5
3,522,518 + PS417_16070 0.38 +0.0
3,522,592 + PS417_16070 0.41 -1.3
3,522,673 + PS417_16070 0.44 +0.2
3,522,931 + PS417_16070 0.54 -1.9
3,523,111 + PS417_16070 0.61 +0.4
3,523,111 + PS417_16070 0.61 +1.8
3,523,111 + -0.1
3,523,111 + PS417_16070 0.61 -2.5
3,523,112 - PS417_16070 0.62 -1.7
3,523,112 - PS417_16070 0.62 -0.7
3,523,240 + PS417_16070 0.67 -1.8
3,523,249 + PS417_16070 0.67 +0.4
3,523,249 + PS417_16070 0.67 -0.5
3,523,250 - PS417_16070 0.67 -0.6
3,523,264 + PS417_16070 0.68 -1.4
3,523,264 + PS417_16070 0.68 -1.1
3,523,267 + +1.2
3,523,267 + PS417_16070 0.68 -3.0
3,523,267 + PS417_16070 0.68 +1.0
3,523,267 + PS417_16070 0.68 +0.1
3,523,292 - PS417_16070 0.69 -1.4
3,524,823 + PS417_16075 0.40 +0.1
3,524,824 - PS417_16075 0.40 -0.9
3,524,824 - PS417_16075 0.40 +0.2
3,524,934 + PS417_16075 0.52 +0.2

Or see this region's nucleotide sequence