Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14925 and PS417_14930 are separated by 10 nucleotides PS417_14930 and PS417_14935 are separated by 28 nucleotides PS417_14935 and PS417_14940 are separated by 131 nucleotides
PS417_14925: PS417_14925 - 2-methylcitrate dehydratase, at 3,259,129 to 3,260,478
_14925
PS417_14930: PS417_14930 - acyl-CoA dehydrogenase, at 3,260,489 to 3,261,652
_14930
PS417_14935: PS417_14935 - transposase, at 3,261,681 to 3,262,499
_14935
PS417_14940: PS417_14940 - LysR family transcriptional regulator, at 3,262,631 to 3,263,521
_14940
Position (kb)
3260
3261
3262 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3259.794 kb on + strand, within PS417_14925 at 3259.795 kb on - strand, within PS417_14925 at 3259.909 kb on + strand, within PS417_14925 at 3260.322 kb on - strand, within PS417_14925 at 3260.529 kb on + strand at 3260.530 kb on - strand at 3260.604 kb on + strand at 3260.604 kb on + strand at 3260.605 kb on - strand at 3260.683 kb on - strand, within PS417_14930 at 3260.728 kb on - strand, within PS417_14930 at 3260.943 kb on + strand, within PS417_14930 at 3260.943 kb on + strand, within PS417_14930 at 3261.035 kb on - strand, within PS417_14930 at 3261.035 kb on - strand at 3261.213 kb on + strand, within PS417_14930 at 3261.213 kb on + strand at 3261.214 kb on - strand, within PS417_14930 at 3261.382 kb on - strand, within PS417_14930 at 3261.382 kb on - strand, within PS417_14930 at 3261.382 kb on - strand, within PS417_14930 at 3261.815 kb on - strand, within PS417_14935 at 3261.943 kb on + strand, within PS417_14935 at 3262.126 kb on + strand, within PS417_14935
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,259,794 + PS417_14925 0.49 -1.7 3,259,795 - PS417_14925 0.49 -0.5 3,259,909 + PS417_14925 0.58 -2.3 3,260,322 - PS417_14925 0.88 -0.7 3,260,529 + +0.3 3,260,530 - -0.5 3,260,604 + +0.1 3,260,604 + -1.4 3,260,605 - +0.2 3,260,683 - PS417_14930 0.17 -1.6 3,260,728 - PS417_14930 0.21 +0.1 3,260,943 + PS417_14930 0.39 +4.1 3,260,943 + PS417_14930 0.39 +0.1 3,261,035 - PS417_14930 0.47 +0.1 3,261,035 - -1.6 3,261,213 + PS417_14930 0.62 -0.1 3,261,213 + +1.1 3,261,214 - PS417_14930 0.62 -0.3 3,261,382 - PS417_14930 0.77 -0.5 3,261,382 - PS417_14930 0.77 +0.7 3,261,382 - PS417_14930 0.77 -0.7 3,261,815 - PS417_14935 0.16 -4.3 3,261,943 + PS417_14935 0.32 -2.0 3,262,126 + PS417_14935 0.54 +0.0
Or see this region's nucleotide sequence