Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_12095 and PS417_12100 are separated by 51 nucleotides PS417_12100 and PS417_12105 are separated by 11 nucleotides PS417_12105 and PS417_12110 overlap by 4 nucleotides PS417_12110 and PS417_12115 are separated by 16 nucleotides
PS417_12095: PS417_12095 - ABC transporter substrate-binding protein, at 2,626,296 to 2,627,144
_12095
PS417_12100: PS417_12100 - amino acid ABC transporter permease, at 2,627,196 to 2,627,858
_12100
PS417_12105: PS417_12105 - ABC transporter permease, at 2,627,870 to 2,628,532
_12105
PS417_12110: PS417_12110 - ATP-binding protein, at 2,628,529 to 2,629,311
_12110
PS417_12115: PS417_12115 - endoribonuclease L-PSP, at 2,629,328 to 2,629,717
_12115
Position (kb)
2627
2628
2629 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2626.912 kb on - strand, within PS417_12095 at 2626.912 kb on - strand, within PS417_12095 at 2626.912 kb on - strand, within PS417_12095 at 2626.974 kb on + strand at 2627.067 kb on + strand at 2627.068 kb on - strand at 2627.099 kb on - strand at 2627.099 kb on - strand at 2627.143 kb on - strand at 2627.185 kb on + strand at 2627.202 kb on + strand at 2627.203 kb on - strand at 2627.373 kb on + strand, within PS417_12100 at 2627.374 kb on - strand, within PS417_12100 at 2627.394 kb on - strand at 2627.424 kb on + strand, within PS417_12100 at 2627.424 kb on + strand, within PS417_12100 at 2627.425 kb on - strand, within PS417_12100 at 2627.505 kb on + strand, within PS417_12100 at 2627.505 kb on + strand at 2627.718 kb on + strand, within PS417_12100 at 2627.718 kb on + strand, within PS417_12100 at 2627.718 kb on + strand, within PS417_12100 at 2627.719 kb on - strand, within PS417_12100 at 2627.721 kb on + strand, within PS417_12100 at 2627.722 kb on - strand, within PS417_12100 at 2627.787 kb on + strand, within PS417_12100 at 2627.873 kb on + strand at 2627.948 kb on + strand, within PS417_12105 at 2627.968 kb on + strand, within PS417_12105 at 2628.015 kb on - strand, within PS417_12105 at 2628.050 kb on + strand, within PS417_12105 at 2628.051 kb on - strand, within PS417_12105 at 2628.084 kb on + strand, within PS417_12105 at 2628.105 kb on - strand, within PS417_12105 at 2628.461 kb on - strand, within PS417_12105 at 2628.461 kb on - strand, within PS417_12105 at 2628.580 kb on - strand at 2628.586 kb on + strand at 2629.109 kb on + strand, within PS417_12110 at 2629.109 kb on + strand, within PS417_12110 at 2629.322 kb on - strand at 2629.327 kb on + strand at 2629.418 kb on + strand, within PS417_12115
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,626,912 - PS417_12095 0.73 +1.1 2,626,912 - PS417_12095 0.73 -1.8 2,626,912 - PS417_12095 0.73 -1.3 2,626,974 + +1.5 2,627,067 + +2.4 2,627,068 - -0.1 2,627,099 - +0.4 2,627,099 - +1.9 2,627,143 - +1.1 2,627,185 + +1.3 2,627,202 + -0.2 2,627,203 - +0.3 2,627,373 + PS417_12100 0.27 +0.0 2,627,374 - PS417_12100 0.27 -2.2 2,627,394 - -1.1 2,627,424 + PS417_12100 0.34 -1.4 2,627,424 + PS417_12100 0.34 +0.1 2,627,425 - PS417_12100 0.35 -2.4 2,627,505 + PS417_12100 0.47 -2.1 2,627,505 + -1.6 2,627,718 + PS417_12100 0.79 +0.5 2,627,718 + PS417_12100 0.79 -1.2 2,627,718 + PS417_12100 0.79 +0.6 2,627,719 - PS417_12100 0.79 +0.3 2,627,721 + PS417_12100 0.79 -1.9 2,627,722 - PS417_12100 0.79 +0.8 2,627,787 + PS417_12100 0.89 +2.1 2,627,873 + +0.5 2,627,948 + PS417_12105 0.12 +0.2 2,627,968 + PS417_12105 0.15 -2.0 2,628,015 - PS417_12105 0.22 +0.7 2,628,050 + PS417_12105 0.27 +1.8 2,628,051 - PS417_12105 0.27 +1.5 2,628,084 + PS417_12105 0.32 +0.5 2,628,105 - PS417_12105 0.35 +1.5 2,628,461 - PS417_12105 0.89 +0.4 2,628,461 - PS417_12105 0.89 -2.3 2,628,580 - -0.1 2,628,586 + -1.4 2,629,109 + PS417_12110 0.74 +0.3 2,629,109 + PS417_12110 0.74 -1.5 2,629,322 - +1.1 2,629,327 + -2.2 2,629,418 + PS417_12115 0.23 +0.5
Or see this region's nucleotide sequence