Strain Fitness in Pseudomonas simiae WCS417 around PS417_12105

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12095 and PS417_12100 are separated by 51 nucleotidesPS417_12100 and PS417_12105 are separated by 11 nucleotidesPS417_12105 and PS417_12110 overlap by 4 nucleotidesPS417_12110 and PS417_12115 are separated by 16 nucleotides PS417_12095: PS417_12095 - ABC transporter substrate-binding protein, at 2,626,296 to 2,627,144 _12095 PS417_12100: PS417_12100 - amino acid ABC transporter permease, at 2,627,196 to 2,627,858 _12100 PS417_12105: PS417_12105 - ABC transporter permease, at 2,627,870 to 2,628,532 _12105 PS417_12110: PS417_12110 - ATP-binding protein, at 2,628,529 to 2,629,311 _12110 PS417_12115: PS417_12115 - endoribonuclease L-PSP, at 2,629,328 to 2,629,717 _12115 Position (kb) 2627 2628 2629Strain fitness (log2 ratio) -2 -1 0 1 2at 2626.912 kb on - strand, within PS417_12095at 2626.912 kb on - strand, within PS417_12095at 2626.912 kb on - strand, within PS417_12095at 2626.974 kb on + strandat 2627.067 kb on + strandat 2627.068 kb on - strandat 2627.099 kb on - strandat 2627.099 kb on - strandat 2627.143 kb on - strandat 2627.185 kb on + strandat 2627.202 kb on + strandat 2627.203 kb on - strandat 2627.373 kb on + strand, within PS417_12100at 2627.374 kb on - strand, within PS417_12100at 2627.394 kb on - strandat 2627.424 kb on + strand, within PS417_12100at 2627.424 kb on + strand, within PS417_12100at 2627.425 kb on - strand, within PS417_12100at 2627.505 kb on + strand, within PS417_12100at 2627.505 kb on + strandat 2627.718 kb on + strand, within PS417_12100at 2627.718 kb on + strand, within PS417_12100at 2627.718 kb on + strand, within PS417_12100at 2627.719 kb on - strand, within PS417_12100at 2627.721 kb on + strand, within PS417_12100at 2627.722 kb on - strand, within PS417_12100at 2627.787 kb on + strand, within PS417_12100at 2627.873 kb on + strandat 2627.948 kb on + strand, within PS417_12105at 2627.968 kb on + strand, within PS417_12105at 2628.015 kb on - strand, within PS417_12105at 2628.050 kb on + strand, within PS417_12105at 2628.051 kb on - strand, within PS417_12105at 2628.084 kb on + strand, within PS417_12105at 2628.105 kb on - strand, within PS417_12105at 2628.461 kb on - strand, within PS417_12105at 2628.461 kb on - strand, within PS417_12105at 2628.580 kb on - strandat 2628.586 kb on + strandat 2629.109 kb on + strand, within PS417_12110at 2629.109 kb on + strand, within PS417_12110at 2629.322 kb on - strandat 2629.327 kb on + strandat 2629.418 kb on + strand, within PS417_12115

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,626,912 - PS417_12095 0.73 +1.1
2,626,912 - PS417_12095 0.73 -1.8
2,626,912 - PS417_12095 0.73 -1.3
2,626,974 + +1.5
2,627,067 + +2.4
2,627,068 - -0.1
2,627,099 - +0.4
2,627,099 - +1.9
2,627,143 - +1.1
2,627,185 + +1.3
2,627,202 + -0.2
2,627,203 - +0.3
2,627,373 + PS417_12100 0.27 +0.0
2,627,374 - PS417_12100 0.27 -2.2
2,627,394 - -1.1
2,627,424 + PS417_12100 0.34 -1.4
2,627,424 + PS417_12100 0.34 +0.1
2,627,425 - PS417_12100 0.35 -2.4
2,627,505 + PS417_12100 0.47 -2.1
2,627,505 + -1.6
2,627,718 + PS417_12100 0.79 +0.5
2,627,718 + PS417_12100 0.79 -1.2
2,627,718 + PS417_12100 0.79 +0.6
2,627,719 - PS417_12100 0.79 +0.3
2,627,721 + PS417_12100 0.79 -1.9
2,627,722 - PS417_12100 0.79 +0.8
2,627,787 + PS417_12100 0.89 +2.1
2,627,873 + +0.5
2,627,948 + PS417_12105 0.12 +0.2
2,627,968 + PS417_12105 0.15 -2.0
2,628,015 - PS417_12105 0.22 +0.7
2,628,050 + PS417_12105 0.27 +1.8
2,628,051 - PS417_12105 0.27 +1.5
2,628,084 + PS417_12105 0.32 +0.5
2,628,105 - PS417_12105 0.35 +1.5
2,628,461 - PS417_12105 0.89 +0.4
2,628,461 - PS417_12105 0.89 -2.3
2,628,580 - -0.1
2,628,586 + -1.4
2,629,109 + PS417_12110 0.74 +0.3
2,629,109 + PS417_12110 0.74 -1.5
2,629,322 - +1.1
2,629,327 + -2.2
2,629,418 + PS417_12115 0.23 +0.5

Or see this region's nucleotide sequence