Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10910 and PS417_10915 overlap by 4 nucleotides PS417_10915 and PS417_10920 are separated by 146 nucleotides
PS417_10910: PS417_10910 - FAD-dependent oxidoreductase, at 2,332,812 to 2,333,945
_10910
PS417_10915: PS417_10915 - ornithine cyclodeaminase, at 2,333,942 to 2,334,886
_10915
PS417_10920: PS417_10920 - LysR family transcriptional regulator, at 2,335,033 to 2,335,974
_10920
Position (kb)
2333
2334
2335 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2333.092 kb on + strand, within PS417_10910 at 2333.093 kb on - strand, within PS417_10910 at 2333.198 kb on - strand, within PS417_10910 at 2333.394 kb on + strand, within PS417_10910 at 2333.395 kb on - strand, within PS417_10910 at 2333.533 kb on + strand, within PS417_10910 at 2333.945 kb on + strand at 2333.945 kb on + strand at 2333.946 kb on - strand at 2333.946 kb on - strand at 2334.096 kb on + strand at 2334.096 kb on + strand, within PS417_10915 at 2334.097 kb on - strand, within PS417_10915 at 2334.286 kb on + strand, within PS417_10915 at 2334.450 kb on + strand, within PS417_10915 at 2334.451 kb on - strand, within PS417_10915 at 2334.451 kb on - strand at 2334.451 kb on - strand, within PS417_10915 at 2334.585 kb on - strand, within PS417_10915 at 2334.662 kb on - strand, within PS417_10915 at 2334.663 kb on + strand, within PS417_10915 at 2334.663 kb on + strand, within PS417_10915 at 2334.714 kb on + strand, within PS417_10915 at 2334.714 kb on + strand, within PS417_10915 at 2334.715 kb on - strand, within PS417_10915 at 2334.815 kb on - strand at 2335.122 kb on - strand at 2335.588 kb on + strand, within PS417_10920 at 2335.789 kb on + strand, within PS417_10920 at 2335.801 kb on - strand, within PS417_10920
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,333,092 + PS417_10910 0.25 -0.7 2,333,093 - PS417_10910 0.25 -1.9 2,333,198 - PS417_10910 0.34 +0.0 2,333,394 + PS417_10910 0.51 +0.5 2,333,395 - PS417_10910 0.51 -2.3 2,333,533 + PS417_10910 0.64 -0.1 2,333,945 + -1.7 2,333,945 + -1.6 2,333,946 - -2.5 2,333,946 - +0.9 2,334,096 + -1.0 2,334,096 + PS417_10915 0.16 -0.9 2,334,097 - PS417_10915 0.16 +2.1 2,334,286 + PS417_10915 0.36 -0.9 2,334,450 + PS417_10915 0.54 +0.3 2,334,451 - PS417_10915 0.54 +0.3 2,334,451 - -1.0 2,334,451 - PS417_10915 0.54 +0.3 2,334,585 - PS417_10915 0.68 -0.8 2,334,662 - PS417_10915 0.76 -0.5 2,334,663 + PS417_10915 0.76 -1.3 2,334,663 + PS417_10915 0.76 -0.3 2,334,714 + PS417_10915 0.82 +0.4 2,334,714 + PS417_10915 0.82 -1.7 2,334,715 - PS417_10915 0.82 -0.3 2,334,815 - -0.4 2,335,122 - -0.3 2,335,588 + PS417_10920 0.59 -1.6 2,335,789 + PS417_10920 0.80 -1.2 2,335,801 - PS417_10920 0.82 -0.9
Or see this region's nucleotide sequence