Strain Fitness in Pseudomonas simiae WCS417 around PS417_06535

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06530 and PS417_06535 are separated by 27 nucleotidesPS417_06535 and PS417_06540 are separated by 269 nucleotides PS417_06530: PS417_06530 - membrane protein, at 1,447,205 to 1,448,347 _06530 PS417_06535: PS417_06535 - pyridoxine 5'-phosphate oxidase, at 1,448,375 to 1,449,022 _06535 PS417_06540: PS417_06540 - membrane protein, at 1,449,292 to 1,449,756 _06540 Position (kb) 1448 1449 1450Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1447.392 kb on + strand, within PS417_06530at 1447.685 kb on + strand, within PS417_06530at 1447.781 kb on + strand, within PS417_06530at 1447.781 kb on + strand, within PS417_06530at 1448.123 kb on + strand, within PS417_06530at 1448.366 kb on + strandat 1449.096 kb on + strandat 1449.096 kb on + strandat 1449.132 kb on - strandat 1449.143 kb on - strandat 1449.143 kb on - strandat 1449.155 kb on + strandat 1449.155 kb on + strandat 1449.156 kb on - strandat 1449.156 kb on - strandat 1449.197 kb on - strandat 1449.197 kb on - strandat 1449.199 kb on + strandat 1449.199 kb on + strandat 1449.261 kb on + strandat 1449.291 kb on + strandat 1449.292 kb on - strandat 1449.292 kb on - strandat 1449.298 kb on - strandat 1449.298 kb on - strandat 1449.298 kb on - strandat 1449.298 kb on - strandat 1449.309 kb on - strandat 1449.309 kb on - strandat 1449.459 kb on + strand, within PS417_06540at 1449.459 kb on + strand, within PS417_06540at 1449.623 kb on + strand, within PS417_06540at 1449.735 kb on + strandat 1449.735 kb on + strandat 1449.736 kb on - strandat 1449.736 kb on - strandat 1449.736 kb on - strandat 1449.736 kb on - strandat 1449.738 kb on + strandat 1449.739 kb on - strandat 1449.773 kb on + strandat 1449.814 kb on + strandat 1449.815 kb on - strandat 1449.868 kb on + strandat 1449.869 kb on - strandat 1449.947 kb on - strandat 1449.950 kb on - strandat 1449.950 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,447,392 + PS417_06530 0.16 -2.8
1,447,685 + PS417_06530 0.42 -2.1
1,447,781 + PS417_06530 0.50 -2.3
1,447,781 + PS417_06530 0.50 -2.0
1,448,123 + PS417_06530 0.80 +0.7
1,448,366 + -1.3
1,449,096 + -0.7
1,449,096 + +0.2
1,449,132 - +0.8
1,449,143 - +1.1
1,449,143 - +0.8
1,449,155 + -1.2
1,449,155 + +3.4
1,449,156 - +2.4
1,449,156 - +0.4
1,449,197 - +0.3
1,449,197 - -0.6
1,449,199 + -0.7
1,449,199 + +0.2
1,449,261 + +0.7
1,449,291 + -0.8
1,449,292 - +0.2
1,449,292 - -3.1
1,449,298 - -0.7
1,449,298 - +0.4
1,449,298 - +1.2
1,449,298 - +0.2
1,449,309 - +0.1
1,449,309 - +0.6
1,449,459 + PS417_06540 0.36 -0.2
1,449,459 + PS417_06540 0.36 -0.9
1,449,623 + PS417_06540 0.71 -0.4
1,449,735 + +1.2
1,449,735 + -1.0
1,449,736 - +0.5
1,449,736 - -1.4
1,449,736 - -1.7
1,449,736 - +0.6
1,449,738 + +1.9
1,449,739 - +1.4
1,449,773 + -0.8
1,449,814 + -0.5
1,449,815 - -3.3
1,449,868 + +1.8
1,449,869 - -0.8
1,449,947 - +0.2
1,449,950 - -0.7
1,449,950 - -0.0

Or see this region's nucleotide sequence