Strain Fitness in Pseudomonas simiae WCS417 around PS417_21705

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21700 and PS417_21705 are separated by 51 nucleotidesPS417_21705 and PS417_21710 are separated by 245 nucleotides PS417_21700: PS417_21700 - arginine N-succinyltransferase, at 4,707,176 to 4,708,201 _21700 PS417_21705: PS417_21705 - arginine N-succinyltransferase, at 4,708,253 to 4,709,272 _21705 PS417_21710: PS417_21710 - Succinylornithine transaminase (EC 2.6.1.81) (from data), at 4,709,518 to 4,710,738 _21710 Position (kb) 4708 4709 4710Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 4707.463 kb on - strand, within PS417_21700at 4707.631 kb on - strand, within PS417_21700at 4707.901 kb on + strand, within PS417_21700at 4707.901 kb on + strand, within PS417_21700at 4707.902 kb on - strand, within PS417_21700at 4707.948 kb on + strand, within PS417_21700at 4708.205 kb on - strandat 4708.345 kb on - strandat 4708.524 kb on + strand, within PS417_21705at 4708.525 kb on - strand, within PS417_21705at 4708.633 kb on - strand, within PS417_21705at 4708.633 kb on - strand, within PS417_21705at 4708.633 kb on - strand, within PS417_21705at 4708.633 kb on - strand, within PS417_21705at 4708.633 kb on - strand, within PS417_21705at 4708.708 kb on - strand, within PS417_21705at 4709.010 kb on + strand, within PS417_21705at 4709.011 kb on - strand, within PS417_21705at 4710.220 kb on - strand, within PS417_21710at 4710.222 kb on - strand, within PS417_21710at 4710.270 kb on - strand, within PS417_21710at 4710.270 kb on - strand, within PS417_21710at 4710.270 kb on - strand, within PS417_21710

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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4,707,463 - PS417_21700 0.28 +1.7
4,707,631 - PS417_21700 0.44 +1.1
4,707,901 + PS417_21700 0.71 +0.9
4,707,901 + PS417_21700 0.71 +1.1
4,707,902 - PS417_21700 0.71 +0.4
4,707,948 + PS417_21700 0.75 +1.3
4,708,205 - +0.9
4,708,345 - +2.7
4,708,524 + PS417_21705 0.27 +3.7
4,708,525 - PS417_21705 0.27 +2.2
4,708,633 - PS417_21705 0.37 +2.9
4,708,633 - PS417_21705 0.37 +3.1
4,708,633 - PS417_21705 0.37 +2.4
4,708,633 - PS417_21705 0.37 +2.4
4,708,633 - PS417_21705 0.37 +5.4
4,708,708 - PS417_21705 0.45 +2.4
4,709,010 + PS417_21705 0.74 +3.3
4,709,011 - PS417_21705 0.74 +3.5
4,710,220 - PS417_21710 0.57 -0.3
4,710,222 - PS417_21710 0.58 -1.5
4,710,270 - PS417_21710 0.62 +0.2
4,710,270 - PS417_21710 0.62 -0.6
4,710,270 - PS417_21710 0.62 +1.3

Or see this region's nucleotide sequence