Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17840 and PS417_17845 are separated by 49 nucleotides PS417_17845 and PS417_17850 are separated by 15 nucleotides PS417_17850 and PS417_17855 are separated by 63 nucleotides
PS417_17840: PS417_17840 - betaine-aldehyde dehydrogenase, at 3,895,311 to 3,896,771
_17840
PS417_17845: PS417_17845 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 3,896,821 to 3,897,678
_17845
PS417_17850: PS417_17850 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 3,897,694 to 3,898,107
_17850
PS417_17855: PS417_17855 - major facilitator transporter, at 3,898,171 to 3,899,475
_17855
Position (kb)
3896
3897
3898 Strain fitness (log2 ratio)
-1
0
1 at 3896.542 kb on - strand, within PS417_17840 at 3896.792 kb on - strand at 3896.805 kb on - strand at 3896.858 kb on + strand at 3896.870 kb on - strand at 3897.046 kb on + strand, within PS417_17845 at 3897.088 kb on + strand, within PS417_17845 at 3897.217 kb on + strand, within PS417_17845 at 3897.217 kb on + strand, within PS417_17845 at 3897.218 kb on - strand, within PS417_17845 at 3898.271 kb on - strand at 3898.271 kb on - strand at 3898.354 kb on + strand, within PS417_17855 at 3898.519 kb on + strand, within PS417_17855 at 3898.520 kb on - strand, within PS417_17855 at 3898.520 kb on - strand, within PS417_17855
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 3,896,542 - PS417_17840 0.84 +0.3 3,896,792 - -0.6 3,896,805 - +0.5 3,896,858 + -0.2 3,896,870 - -0.0 3,897,046 + PS417_17845 0.26 +0.7 3,897,088 + PS417_17845 0.31 +0.5 3,897,217 + PS417_17845 0.46 +1.1 3,897,217 + PS417_17845 0.46 +0.8 3,897,218 - PS417_17845 0.46 +0.3 3,898,271 - +0.4 3,898,271 - -0.5 3,898,354 + PS417_17855 0.14 +0.2 3,898,519 + PS417_17855 0.27 +0.8 3,898,520 - PS417_17855 0.27 -0.9 3,898,520 - PS417_17855 0.27 -0.6
Or see this region's nucleotide sequence