Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03470 and PS417_03475 overlap by 14 nucleotides PS417_03475 and PS417_03480 overlap by 4 nucleotides PS417_03480 and PS417_03485 overlap by 4 nucleotides PS417_03485 and PS417_03490 overlap by 4 nucleotides PS417_03490 and PS417_03495 are separated by 7 nucleotides PS417_03495 and PS417_03500 are separated by 10 nucleotides
PS417_03470: PS417_03470 - ATP synthase, at 798,058 to 799,416
_03470
PS417_03475: PS417_03475 - type III secretion protein, at 799,403 to 799,831
_03475
PS417_03480: PS417_03480 - type III secretion protein, at 799,828 to 800,286
_03480
PS417_03485: PS417_03485 - type III secretion protein, at 800,283 to 801,296
_03485
PS417_03490: PS417_03490 - type III secretion system protein SsaR, at 801,293 to 801,946
_03490
PS417_03495: PS417_03495 - type III secretory protein EscS, at 801,954 to 802,217
_03495
PS417_03500: PS417_03500 - type III secretion system protein, at 802,228 to 803,016
_03500
Position (kb) 800
801
802 Strain fitness (log2 ratio) -1
0
1 at 799.402 kb on + strand at 799.402 kb on + strand at 799.403 kb on - strand at 799.617 kb on + strand, within PS417_03475 at 799.618 kb on - strand, within PS417_03475 at 799.618 kb on - strand, within PS417_03475 at 799.800 kb on + strand at 799.800 kb on + strand at 800.096 kb on - strand, within PS417_03480 at 800.610 kb on + strand, within PS417_03485 at 800.722 kb on + strand, within PS417_03485 at 800.723 kb on - strand, within PS417_03485 at 800.994 kb on - strand, within PS417_03485 at 801.058 kb on + strand, within PS417_03485 at 801.103 kb on + strand, within PS417_03485 at 801.104 kb on - strand, within PS417_03485 at 801.104 kb on - strand, within PS417_03485 at 801.104 kb on - strand, within PS417_03485 at 801.126 kb on - strand, within PS417_03485 at 801.204 kb on + strand at 801.204 kb on + strand at 801.204 kb on + strand at 801.247 kb on + strand at 801.636 kb on + strand, within PS417_03490 at 801.636 kb on + strand, within PS417_03490 at 801.637 kb on - strand, within PS417_03490 at 801.637 kb on - strand, within PS417_03490 at 801.780 kb on - strand, within PS417_03490 at 801.780 kb on - strand, within PS417_03490 at 801.938 kb on + strand at 802.075 kb on + strand, within PS417_03495 at 802.076 kb on - strand, within PS417_03495 at 802.076 kb on - strand, within PS417_03495 at 802.237 kb on + strand at 802.278 kb on + strand at 802.279 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 799,402 + -0.4 799,402 + -0.2 799,403 - -0.4 799,617 + PS417_03475 0.50 +0.4 799,618 - PS417_03475 0.50 +0.1 799,618 - PS417_03475 0.50 +0.7 799,800 + -0.3 799,800 + -0.9 800,096 - PS417_03480 0.58 -1.1 800,610 + PS417_03485 0.32 -0.8 800,722 + PS417_03485 0.43 -1.3 800,723 - PS417_03485 0.43 -0.4 800,994 - PS417_03485 0.70 +0.3 801,058 + PS417_03485 0.76 -1.6 801,103 + PS417_03485 0.81 +0.2 801,104 - PS417_03485 0.81 -1.5 801,104 - PS417_03485 0.81 -1.3 801,104 - PS417_03485 0.81 -0.1 801,126 - PS417_03485 0.83 +0.3 801,204 + -0.1 801,204 + -0.1 801,204 + +0.1 801,247 + -0.4 801,636 + PS417_03490 0.52 -0.1 801,636 + PS417_03490 0.52 -0.4 801,637 - PS417_03490 0.53 -0.2 801,637 - PS417_03490 0.53 +0.4 801,780 - PS417_03490 0.74 -0.0 801,780 - PS417_03490 0.74 +1.1 801,938 + +0.8 802,075 + PS417_03495 0.46 -0.4 802,076 - PS417_03495 0.46 +0.0 802,076 - PS417_03495 0.46 +0.2 802,237 + +0.7 802,278 + -0.4 802,279 - -0.1
Or see this region's nucleotide sequence