Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26440 and PS417_26445 are separated by 258 nucleotides PS417_26445 and PS417_26450 are separated by 19 nucleotides
PS417_26440: PS417_26440 - transketolase, at 5,717,335 to 5,719,332
_26440
PS417_26445: PS417_26445 - ArsR family transcriptional regulator, at 5,719,591 to 5,720,586
_26445
PS417_26450: PS417_26450 - S-adenosylmethionine synthetase, at 5,720,606 to 5,721,796
_26450
Position (kb)
5719
5720
5721 Strain fitness (log2 ratio)
-2
-1
0
1 at 5719.486 kb on + strand at 5719.486 kb on + strand at 5719.493 kb on + strand at 5719.506 kb on + strand at 5719.507 kb on - strand at 5719.507 kb on - strand at 5719.508 kb on + strand at 5719.509 kb on - strand at 5719.598 kb on + strand at 5719.598 kb on + strand at 5719.598 kb on + strand at 5719.598 kb on + strand at 5719.598 kb on + strand at 5719.602 kb on + strand at 5719.715 kb on + strand, within PS417_26445 at 5719.775 kb on + strand, within PS417_26445 at 5720.509 kb on + strand at 5720.509 kb on + strand at 5720.513 kb on + strand at 5720.513 kb on + strand at 5720.519 kb on + strand at 5720.523 kb on + strand at 5720.523 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 5,719,486 + -0.6 5,719,486 + +0.6 5,719,493 + -0.3 5,719,506 + -1.1 5,719,507 - +0.0 5,719,507 - -0.6 5,719,508 + -0.4 5,719,509 - -1.8 5,719,598 + -0.2 5,719,598 + -1.6 5,719,598 + -0.1 5,719,598 + +0.4 5,719,598 + -0.0 5,719,602 + +0.6 5,719,715 + PS417_26445 0.12 -0.9 5,719,775 + PS417_26445 0.18 +0.0 5,720,509 + -0.1 5,720,509 + +1.4 5,720,513 + -0.2 5,720,513 + +0.9 5,720,519 + -0.3 5,720,523 + +0.9 5,720,523 + -0.2
Or see this region's nucleotide sequence