Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14300 and PS417_14305 are separated by 14 nucleotides PS417_14305 and PS417_14310 are separated by 42 nucleotides PS417_14310 and PS417_14315 are separated by 61 nucleotides
PS417_14300: PS417_14300 - aspartate:proton symporter, at 3,129,584 to 3,131,203
_14300
PS417_14305: PS417_14305 - hydroxyproline-2-epimerase, at 3,131,218 to 3,132,144
_14305
PS417_14310: PS417_14310 - dihydrodipicolinate synthetase, at 3,132,187 to 3,133,134
_14310
PS417_14315: PS417_14315 - 2,5-dioxovalerate dehydrogenase, at 3,133,196 to 3,134,767
_14315
Position (kb)
3132
3133
3134 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3131.390 kb on + strand, within PS417_14305 at 3131.407 kb on + strand at 3131.677 kb on + strand, within PS417_14305 at 3131.908 kb on + strand at 3132.034 kb on + strand, within PS417_14305 at 3132.082 kb on + strand at 3132.083 kb on - strand at 3132.160 kb on + strand at 3132.319 kb on + strand, within PS417_14310 at 3132.592 kb on + strand, within PS417_14310 at 3132.592 kb on + strand, within PS417_14310 at 3132.605 kb on - strand, within PS417_14310 at 3132.776 kb on + strand, within PS417_14310 at 3132.973 kb on + strand, within PS417_14310 at 3132.974 kb on - strand, within PS417_14310 at 3132.976 kb on + strand, within PS417_14310 at 3132.976 kb on + strand, within PS417_14310 at 3132.976 kb on + strand, within PS417_14310 at 3132.977 kb on - strand, within PS417_14310 at 3132.977 kb on - strand, within PS417_14310 at 3133.013 kb on - strand, within PS417_14310 at 3133.182 kb on - strand at 3133.545 kb on + strand, within PS417_14315 at 3134.012 kb on + strand, within PS417_14315 at 3134.013 kb on - strand, within PS417_14315 at 3134.013 kb on - strand, within PS417_14315
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 3,131,390 + PS417_14305 0.19 -0.2 3,131,407 + +0.4 3,131,677 + PS417_14305 0.50 -1.4 3,131,908 + +2.1 3,132,034 + PS417_14305 0.88 -0.5 3,132,082 + +0.4 3,132,083 - -0.6 3,132,160 + -0.5 3,132,319 + PS417_14310 0.14 -0.8 3,132,592 + PS417_14310 0.43 -0.5 3,132,592 + PS417_14310 0.43 -1.4 3,132,605 - PS417_14310 0.44 -0.3 3,132,776 + PS417_14310 0.62 -1.5 3,132,973 + PS417_14310 0.83 -1.2 3,132,974 - PS417_14310 0.83 -2.1 3,132,976 + PS417_14310 0.83 -1.1 3,132,976 + PS417_14310 0.83 -1.3 3,132,976 + PS417_14310 0.83 -0.7 3,132,977 - PS417_14310 0.83 +1.1 3,132,977 - PS417_14310 0.83 -0.3 3,133,013 - PS417_14310 0.87 -0.1 3,133,182 - -0.6 3,133,545 + PS417_14315 0.22 +0.9 3,134,012 + PS417_14315 0.52 -0.9 3,134,013 - PS417_14315 0.52 +0.0 3,134,013 - PS417_14315 0.52 -1.7
Or see this region's nucleotide sequence