Strain Fitness in Pseudomonas simiae WCS417 around PS417_04730

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04725 and PS417_04730 are separated by 123 nucleotidesPS417_04730 and PS417_04735 are separated by 124 nucleotides PS417_04725: PS417_04725 - chemotaxis protein CheW, at 1,047,934 to 1,048,836 _04725 PS417_04730: PS417_04730 - bifunctional glyoxylate/hydroxypyruvate reductase B, at 1,048,960 to 1,049,934 _04730 PS417_04735: PS417_04735 - LysR family transcriptional regulator, at 1,050,059 to 1,051,027 _04735 Position (kb) 1048 1049 1050Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1047.982 kb on - strandat 1048.085 kb on + strand, within PS417_04725at 1048.085 kb on + strand, within PS417_04725at 1048.085 kb on + strand, within PS417_04725at 1048.086 kb on - strand, within PS417_04725at 1048.423 kb on + strand, within PS417_04725at 1048.423 kb on + strand, within PS417_04725at 1048.546 kb on + strand, within PS417_04725at 1048.546 kb on + strand, within PS417_04725at 1048.546 kb on + strand, within PS417_04725at 1048.547 kb on - strand, within PS417_04725at 1048.789 kb on - strandat 1048.831 kb on - strandat 1048.868 kb on + strandat 1048.868 kb on + strandat 1048.868 kb on + strandat 1048.868 kb on + strandat 1048.868 kb on + strandat 1048.869 kb on - strandat 1048.869 kb on - strandat 1048.869 kb on - strandat 1048.869 kb on - strandat 1048.869 kb on - strandat 1049.147 kb on + strand, within PS417_04730at 1049.147 kb on + strand, within PS417_04730at 1049.147 kb on + strand, within PS417_04730at 1049.147 kb on + strand, within PS417_04730at 1049.148 kb on - strand, within PS417_04730at 1049.696 kb on + strand, within PS417_04730at 1049.696 kb on + strand, within PS417_04730at 1049.696 kb on + strand, within PS417_04730at 1049.697 kb on - strand, within PS417_04730at 1049.697 kb on - strand, within PS417_04730at 1049.752 kb on + strand, within PS417_04730at 1049.753 kb on - strand, within PS417_04730at 1050.103 kb on - strandat 1050.160 kb on - strand, within PS417_04735at 1050.207 kb on + strand, within PS417_04735at 1050.207 kb on + strandat 1050.208 kb on - strand, within PS417_04735at 1050.240 kb on + strand, within PS417_04735at 1050.240 kb on + strand, within PS417_04735at 1050.241 kb on - strand, within PS417_04735at 1050.241 kb on - strand, within PS417_04735at 1050.513 kb on + strand, within PS417_04735at 1050.540 kb on + strand, within PS417_04735at 1050.540 kb on + strand, within PS417_04735at 1050.544 kb on + strand, within PS417_04735at 1050.545 kb on - strand, within PS417_04735at 1050.545 kb on - strand, within PS417_04735at 1050.545 kb on - strand, within PS417_04735at 1050.834 kb on + strand, within PS417_04735at 1050.835 kb on - strand, within PS417_04735

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,047,982 - -0.3
1,048,085 + PS417_04725 0.17 -3.8
1,048,085 + PS417_04725 0.17 -0.3
1,048,085 + PS417_04725 0.17 -1.1
1,048,086 - PS417_04725 0.17 -1.3
1,048,423 + PS417_04725 0.54 +0.6
1,048,423 + PS417_04725 0.54 -1.0
1,048,546 + PS417_04725 0.68 +1.2
1,048,546 + PS417_04725 0.68 -0.9
1,048,546 + PS417_04725 0.68 +0.6
1,048,547 - PS417_04725 0.68 -2.7
1,048,789 - -1.7
1,048,831 - -0.7
1,048,868 + -0.7
1,048,868 + -0.4
1,048,868 + +0.2
1,048,868 + +0.3
1,048,868 + -2.0
1,048,869 - +0.7
1,048,869 - -0.8
1,048,869 - -0.8
1,048,869 - -0.1
1,048,869 - -2.8
1,049,147 + PS417_04730 0.19 -3.5
1,049,147 + PS417_04730 0.19 +1.2
1,049,147 + PS417_04730 0.19 -0.9
1,049,147 + PS417_04730 0.19 +1.7
1,049,148 - PS417_04730 0.19 +2.0
1,049,696 + PS417_04730 0.75 +0.8
1,049,696 + PS417_04730 0.75 +0.7
1,049,696 + PS417_04730 0.75 +1.5
1,049,697 - PS417_04730 0.76 -0.1
1,049,697 - PS417_04730 0.76 +0.1
1,049,752 + PS417_04730 0.81 +2.0
1,049,753 - PS417_04730 0.81 -0.3
1,050,103 - +0.4
1,050,160 - PS417_04735 0.10 +0.6
1,050,207 + PS417_04735 0.15 -2.0
1,050,207 + +0.7
1,050,208 - PS417_04735 0.15 +0.2
1,050,240 + PS417_04735 0.19 +1.0
1,050,240 + PS417_04735 0.19 +1.1
1,050,241 - PS417_04735 0.19 +0.8
1,050,241 - PS417_04735 0.19 +0.2
1,050,513 + PS417_04735 0.47 +0.5
1,050,540 + PS417_04735 0.50 +0.4
1,050,540 + PS417_04735 0.50 +0.2
1,050,544 + PS417_04735 0.50 +0.1
1,050,545 - PS417_04735 0.50 +1.1
1,050,545 - PS417_04735 0.50 -1.6
1,050,545 - PS417_04735 0.50 +0.4
1,050,834 + PS417_04735 0.80 -1.0
1,050,835 - PS417_04735 0.80 +0.7

Or see this region's nucleotide sequence