Strain Fitness in Pseudomonas simiae WCS417 around PS417_04295

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04285 and PS417_04290 are separated by 45 nucleotidesPS417_04290 and PS417_04295 are separated by 108 nucleotidesPS417_04295 and PS417_04300 are separated by 150 nucleotidesPS417_04300 and PS417_04305 overlap by 8 nucleotides PS417_04285: PS417_04285 - protease TldD, at 961,588 to 963,030 _04285 PS417_04290: PS417_04290 - hypothetical protein, at 963,076 to 963,597 _04290 PS417_04295: PS417_04295 - peptidase PmbA, at 963,706 to 965,052 _04295 PS417_04300: PS417_04300 - FagA protein, at 965,203 to 965,598 _04300 PS417_04305: PS417_04305 - aspartate ammonia-lyase, at 965,591 to 966,967 _04305 Position (kb) 963 964 965 966Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 962.740 kb on + strand, within PS417_04285at 962.741 kb on - strand, within PS417_04285at 962.813 kb on - strand, within PS417_04285at 962.938 kb on - strandat 962.938 kb on - strandat 963.029 kb on - strandat 963.116 kb on + strandat 963.116 kb on + strandat 963.129 kb on + strand, within PS417_04290at 963.154 kb on - strand, within PS417_04290at 963.288 kb on + strand, within PS417_04290at 963.402 kb on + strand, within PS417_04290at 963.501 kb on + strand, within PS417_04290at 963.502 kb on - strand, within PS417_04290at 963.585 kb on - strandat 963.910 kb on + strand, within PS417_04295at 963.910 kb on + strand, within PS417_04295at 963.910 kb on + strand, within PS417_04295at 963.910 kb on + strand, within PS417_04295at 963.911 kb on - strand, within PS417_04295at 963.911 kb on - strand, within PS417_04295at 964.213 kb on + strand, within PS417_04295at 964.214 kb on - strand, within PS417_04295at 964.243 kb on + strand, within PS417_04295at 964.260 kb on + strand, within PS417_04295at 964.312 kb on + strand, within PS417_04295at 964.318 kb on + strand, within PS417_04295at 964.319 kb on - strand, within PS417_04295at 964.319 kb on - strand, within PS417_04295at 964.608 kb on + strand, within PS417_04295at 964.678 kb on + strand, within PS417_04295at 964.678 kb on + strand, within PS417_04295at 964.679 kb on - strand, within PS417_04295at 964.679 kb on - strand, within PS417_04295at 964.679 kb on - strand, within PS417_04295at 964.679 kb on - strand, within PS417_04295at 964.693 kb on + strand, within PS417_04295at 964.693 kb on + strand, within PS417_04295at 964.694 kb on - strand, within PS417_04295at 964.694 kb on - strand, within PS417_04295at 964.694 kb on - strand, within PS417_04295at 964.861 kb on + strand, within PS417_04295at 964.862 kb on - strand, within PS417_04295at 965.074 kb on + strandat 965.308 kb on + strand, within PS417_04300at 965.309 kb on - strand, within PS417_04300at 965.309 kb on - strand, within PS417_04300at 965.309 kb on - strand, within PS417_04300at 965.596 kb on + strandat 965.596 kb on + strandat 965.596 kb on + strandat 965.597 kb on - strandat 965.654 kb on + strandat 965.654 kb on + strandat 965.654 kb on + strandat 965.654 kb on + strandat 965.655 kb on - strandat 965.655 kb on - strandat 965.655 kb on - strandat 965.891 kb on - strand, within PS417_04305

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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962,740 + PS417_04285 0.80 -2.5
962,741 - PS417_04285 0.80 +0.7
962,813 - PS417_04285 0.85 -1.9
962,938 - -0.1
962,938 - +1.0
963,029 - -0.6
963,116 + -1.8
963,116 + -1.0
963,129 + PS417_04290 0.10 -1.6
963,154 - PS417_04290 0.15 -1.6
963,288 + PS417_04290 0.41 -1.4
963,402 + PS417_04290 0.62 -0.2
963,501 + PS417_04290 0.81 -2.5
963,502 - PS417_04290 0.82 -0.4
963,585 - -0.9
963,910 + PS417_04295 0.15 -0.0
963,910 + PS417_04295 0.15 -0.2
963,910 + PS417_04295 0.15 -1.6
963,910 + PS417_04295 0.15 -1.6
963,911 - PS417_04295 0.15 -0.2
963,911 - PS417_04295 0.15 +0.4
964,213 + PS417_04295 0.38 -0.9
964,214 - PS417_04295 0.38 -1.0
964,243 + PS417_04295 0.40 -0.5
964,260 + PS417_04295 0.41 +0.8
964,312 + PS417_04295 0.45 -0.3
964,318 + PS417_04295 0.45 -4.5
964,319 - PS417_04295 0.46 -0.7
964,319 - PS417_04295 0.46 -0.7
964,608 + PS417_04295 0.67 +0.8
964,678 + PS417_04295 0.72 -0.6
964,678 + PS417_04295 0.72 -0.4
964,679 - PS417_04295 0.72 -1.2
964,679 - PS417_04295 0.72 -2.1
964,679 - PS417_04295 0.72 -2.1
964,679 - PS417_04295 0.72 +1.8
964,693 + PS417_04295 0.73 -0.9
964,693 + PS417_04295 0.73 -3.2
964,694 - PS417_04295 0.73 -1.0
964,694 - PS417_04295 0.73 +0.4
964,694 - PS417_04295 0.73 +0.3
964,861 + PS417_04295 0.86 -1.6
964,862 - PS417_04295 0.86 -2.0
965,074 + -0.0
965,308 + PS417_04300 0.27 +1.2
965,309 - PS417_04300 0.27 +0.5
965,309 - PS417_04300 0.27 +1.7
965,309 - PS417_04300 0.27 -0.5
965,596 + -1.9
965,596 + +0.3
965,596 + +0.1
965,597 - +0.3
965,654 + +0.1
965,654 + +1.3
965,654 + -0.1
965,654 + +1.4
965,655 - -0.1
965,655 - -0.6
965,655 - +0.0
965,891 - PS417_04305 0.22 +0.2

Or see this region's nucleotide sequence