Strain Fitness in Pseudomonas simiae WCS417 around PS417_02505

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02500 and PS417_02505 overlap by 1 nucleotidesPS417_02505 and PS417_02510 are separated by 294 nucleotides PS417_02500: PS417_02500 - membrane protein, at 571,153 to 572,328 _02500 PS417_02505: PS417_02505 - membane protease HflC, at 572,328 to 573,194 _02505 PS417_02510: PS417_02510 - ATP phosphoribosyltransferase regulatory subunit, at 573,489 to 574,676 _02510 Position (kb) 572 573 574Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1at 573.192 kb on + strandat 573.192 kb on + strandat 573.211 kb on + strandat 573.274 kb on + strandat 573.274 kb on + strandat 573.274 kb on + strandat 573.274 kb on + strandat 573.410 kb on + strandat 573.487 kb on + strandat 573.535 kb on + strandat 573.993 kb on + strand, within PS417_02510at 574.057 kb on + strand, within PS417_02510at 574.057 kb on + strand, within PS417_02510

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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573,192 + +0.5
573,192 + -0.2
573,211 + +0.6
573,274 + -0.6
573,274 + -0.8
573,274 + -0.3
573,274 + -2.3
573,410 + +0.7
573,487 + -3.5
573,535 + -5.3
573,993 + PS417_02510 0.42 -8.1
574,057 + PS417_02510 0.48 -1.6
574,057 + PS417_02510 0.48 -5.3

Or see this region's nucleotide sequence