Strain Fitness in Pseudomonas simiae WCS417 around PS417_23430

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_23425 and PS417_23430 are separated by 26 nucleotidesPS417_23430 and PS417_23435 are separated by 498 nucleotides PS417_23425: PS417_23425 - hypothetical protein, at 5,073,010 to 5,074,368 _23425 PS417_23430: PS417_23430 - hypothetical protein, at 5,074,395 to 5,076,170 _23430 PS417_23435: PS417_23435 - serine/threonine protein kinase, at 5,076,669 to 5,077,580 _23435 Position (kb) 5074 5075 5076 5077Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5073.402 kb on - strand, within PS417_23425at 5073.429 kb on - strand, within PS417_23425at 5073.429 kb on - strand, within PS417_23425at 5073.446 kb on + strand, within PS417_23425at 5073.446 kb on + strand, within PS417_23425at 5073.446 kb on + strand, within PS417_23425at 5073.446 kb on + strand, within PS417_23425at 5073.447 kb on - strand, within PS417_23425at 5073.447 kb on - strand, within PS417_23425at 5073.447 kb on - strand, within PS417_23425at 5073.447 kb on - strand, within PS417_23425at 5073.479 kb on + strand, within PS417_23425at 5073.480 kb on - strand, within PS417_23425at 5073.602 kb on + strand, within PS417_23425at 5073.603 kb on - strand, within PS417_23425at 5073.791 kb on + strand, within PS417_23425at 5073.909 kb on - strand, within PS417_23425at 5073.909 kb on - strand, within PS417_23425at 5073.909 kb on - strand, within PS417_23425at 5073.911 kb on + strand, within PS417_23425at 5073.911 kb on + strand, within PS417_23425at 5073.992 kb on + strand, within PS417_23425at 5074.032 kb on - strand, within PS417_23425at 5074.044 kb on + strand, within PS417_23425at 5074.045 kb on - strand, within PS417_23425at 5074.045 kb on - strand, within PS417_23425at 5074.046 kb on + strand, within PS417_23425at 5074.046 kb on + strand, within PS417_23425at 5074.046 kb on + strand, within PS417_23425at 5074.046 kb on + strand, within PS417_23425at 5074.047 kb on - strand, within PS417_23425at 5074.047 kb on - strand, within PS417_23425at 5074.047 kb on - strand, within PS417_23425at 5074.047 kb on - strand, within PS417_23425at 5074.047 kb on - strand, within PS417_23425at 5074.047 kb on - strand, within PS417_23425at 5074.047 kb on - strand, within PS417_23425at 5074.103 kb on + strand, within PS417_23425at 5074.103 kb on + strand, within PS417_23425at 5074.104 kb on - strand, within PS417_23425at 5074.104 kb on - strand, within PS417_23425at 5074.104 kb on - strand, within PS417_23425at 5074.362 kb on + strandat 5074.363 kb on - strandat 5074.386 kb on + strandat 5074.450 kb on + strandat 5074.450 kb on + strandat 5074.475 kb on - strandat 5074.475 kb on - strandat 5074.475 kb on - strandat 5074.492 kb on + strandat 5074.493 kb on - strandat 5074.493 kb on - strandat 5074.634 kb on - strand, within PS417_23430at 5074.634 kb on - strand, within PS417_23430at 5074.634 kb on - strand, within PS417_23430at 5074.968 kb on - strand, within PS417_23430at 5075.086 kb on + strand, within PS417_23430at 5075.087 kb on - strand, within PS417_23430at 5075.087 kb on - strand, within PS417_23430at 5075.087 kb on - strand, within PS417_23430at 5075.087 kb on - strand, within PS417_23430at 5075.089 kb on + strand, within PS417_23430at 5075.090 kb on - strand, within PS417_23430at 5075.233 kb on + strand, within PS417_23430at 5075.233 kb on + strand, within PS417_23430at 5075.233 kb on + strand, within PS417_23430at 5075.234 kb on - strand, within PS417_23430at 5075.234 kb on - strand, within PS417_23430at 5075.245 kb on + strand, within PS417_23430at 5075.335 kb on - strand, within PS417_23430at 5075.335 kb on - strandat 5075.335 kb on - strand, within PS417_23430at 5075.425 kb on + strand, within PS417_23430at 5075.426 kb on - strand, within PS417_23430at 5075.426 kb on - strand, within PS417_23430at 5075.426 kb on - strand, within PS417_23430at 5075.663 kb on + strand, within PS417_23430at 5075.664 kb on - strand, within PS417_23430at 5075.664 kb on - strand, within PS417_23430at 5075.664 kb on - strand, within PS417_23430at 5075.728 kb on + strand, within PS417_23430at 5075.728 kb on + strand, within PS417_23430at 5075.729 kb on - strand, within PS417_23430at 5075.845 kb on + strand, within PS417_23430at 5075.845 kb on + strand, within PS417_23430at 5075.851 kb on + strand, within PS417_23430at 5075.868 kb on + strand, within PS417_23430at 5075.868 kb on + strand, within PS417_23430at 5075.868 kb on + strand, within PS417_23430at 5075.869 kb on - strand, within PS417_23430at 5075.869 kb on - strand, within PS417_23430at 5075.869 kb on - strand, within PS417_23430at 5076.222 kb on - strandat 5076.355 kb on + strandat 5076.356 kb on - strandat 5076.413 kb on + strandat 5076.497 kb on - strandat 5076.497 kb on - strandat 5076.500 kb on + strandat 5076.501 kb on - strandat 5076.524 kb on - strandat 5076.524 kb on - strandat 5076.524 kb on - strandat 5076.617 kb on - strandat 5076.679 kb on + strandat 5076.679 kb on + strandat 5076.910 kb on + strand, within PS417_23435at 5076.910 kb on + strand, within PS417_23435at 5076.910 kb on + strand, within PS417_23435at 5076.910 kb on + strand, within PS417_23435at 5077.114 kb on + strand, within PS417_23435at 5077.115 kb on - strand, within PS417_23435at 5077.115 kb on - strand, within PS417_23435at 5077.115 kb on - strand, within PS417_23435at 5077.115 kb on - strand, within PS417_23435at 5077.115 kb on - strand, within PS417_23435at 5077.115 kb on - strand, within PS417_23435at 5077.154 kb on - strand, within PS417_23435

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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5,073,402 - PS417_23425 0.29 -1.3
5,073,429 - PS417_23425 0.31 +0.1
5,073,429 - PS417_23425 0.31 +0.5
5,073,446 + PS417_23425 0.32 +0.1
5,073,446 + PS417_23425 0.32 +0.3
5,073,446 + PS417_23425 0.32 +0.6
5,073,446 + PS417_23425 0.32 +0.3
5,073,447 - PS417_23425 0.32 +0.7
5,073,447 - PS417_23425 0.32 -0.9
5,073,447 - PS417_23425 0.32 +1.1
5,073,447 - PS417_23425 0.32 +0.4
5,073,479 + PS417_23425 0.35 +0.2
5,073,480 - PS417_23425 0.35 +0.3
5,073,602 + PS417_23425 0.44 +1.5
5,073,603 - PS417_23425 0.44 -1.4
5,073,791 + PS417_23425 0.57 -0.8
5,073,909 - PS417_23425 0.66 -2.6
5,073,909 - PS417_23425 0.66 -0.2
5,073,909 - PS417_23425 0.66 -1.6
5,073,911 + PS417_23425 0.66 -0.0
5,073,911 + PS417_23425 0.66 -1.5
5,073,992 + PS417_23425 0.72 -0.5
5,074,032 - PS417_23425 0.75 +0.3
5,074,044 + PS417_23425 0.76 -0.1
5,074,045 - PS417_23425 0.76 -0.4
5,074,045 - PS417_23425 0.76 +2.1
5,074,046 + PS417_23425 0.76 -0.4
5,074,046 + PS417_23425 0.76 -0.3
5,074,046 + PS417_23425 0.76 -0.4
5,074,046 + PS417_23425 0.76 -2.9
5,074,047 - PS417_23425 0.76 -0.2
5,074,047 - PS417_23425 0.76 +0.2
5,074,047 - PS417_23425 0.76 +0.3
5,074,047 - PS417_23425 0.76 -2.3
5,074,047 - PS417_23425 0.76 -1.2
5,074,047 - PS417_23425 0.76 +1.2
5,074,047 - PS417_23425 0.76 -0.2
5,074,103 + PS417_23425 0.80 -1.5
5,074,103 + PS417_23425 0.80 +2.2
5,074,104 - PS417_23425 0.81 +0.4
5,074,104 - PS417_23425 0.81 -0.7
5,074,104 - PS417_23425 0.81 +0.4
5,074,362 + -1.6
5,074,363 - -1.1
5,074,386 + +0.2
5,074,450 + -0.7
5,074,450 + -3.5
5,074,475 - -0.1
5,074,475 - +0.2
5,074,475 - -0.2
5,074,492 + -0.2
5,074,493 - +0.6
5,074,493 - +0.5
5,074,634 - PS417_23430 0.13 -0.9
5,074,634 - PS417_23430 0.13 -0.8
5,074,634 - PS417_23430 0.13 +1.0
5,074,968 - PS417_23430 0.32 +0.6
5,075,086 + PS417_23430 0.39 +0.9
5,075,087 - PS417_23430 0.39 -0.4
5,075,087 - PS417_23430 0.39 +0.5
5,075,087 - PS417_23430 0.39 -2.1
5,075,087 - PS417_23430 0.39 +0.8
5,075,089 + PS417_23430 0.39 -0.2
5,075,090 - PS417_23430 0.39 +0.6
5,075,233 + PS417_23430 0.47 +3.1
5,075,233 + PS417_23430 0.47 +0.9
5,075,233 + PS417_23430 0.47 -1.2
5,075,234 - PS417_23430 0.47 -0.3
5,075,234 - PS417_23430 0.47 +0.4
5,075,245 + PS417_23430 0.48 -0.4
5,075,335 - PS417_23430 0.53 -0.3
5,075,335 - +0.6
5,075,335 - PS417_23430 0.53 -1.7
5,075,425 + PS417_23430 0.58 +0.0
5,075,426 - PS417_23430 0.58 +0.8
5,075,426 - PS417_23430 0.58 -0.4
5,075,426 - PS417_23430 0.58 -0.3
5,075,663 + PS417_23430 0.71 +1.2
5,075,664 - PS417_23430 0.71 -2.9
5,075,664 - PS417_23430 0.71 -0.7
5,075,664 - PS417_23430 0.71 +2.4
5,075,728 + PS417_23430 0.75 +0.6
5,075,728 + PS417_23430 0.75 -1.0
5,075,729 - PS417_23430 0.75 +1.9
5,075,845 + PS417_23430 0.82 +1.6
5,075,845 + PS417_23430 0.82 +2.5
5,075,851 + PS417_23430 0.82 +1.1
5,075,868 + PS417_23430 0.83 +0.7
5,075,868 + PS417_23430 0.83 -2.1
5,075,868 + PS417_23430 0.83 +0.3
5,075,869 - PS417_23430 0.83 -2.6
5,075,869 - PS417_23430 0.83 -0.1
5,075,869 - PS417_23430 0.83 +1.7
5,076,222 - +0.8
5,076,355 + -1.9
5,076,356 - +1.5
5,076,413 + -0.5
5,076,497 - +2.2
5,076,497 - +0.6
5,076,500 + +1.0
5,076,501 - +0.8
5,076,524 - +0.4
5,076,524 - -0.2
5,076,524 - -0.5
5,076,617 - -0.1
5,076,679 + -1.3
5,076,679 + -0.5
5,076,910 + PS417_23435 0.26 +0.5
5,076,910 + PS417_23435 0.26 +1.1
5,076,910 + PS417_23435 0.26 -0.5
5,076,910 + PS417_23435 0.26 -0.2
5,077,114 + PS417_23435 0.49 +1.9
5,077,115 - PS417_23435 0.49 +0.6
5,077,115 - PS417_23435 0.49 -0.5
5,077,115 - PS417_23435 0.49 +0.4
5,077,115 - PS417_23435 0.49 -2.3
5,077,115 - PS417_23435 0.49 -1.2
5,077,115 - PS417_23435 0.49 +0.8
5,077,154 - PS417_23435 0.53 +0.6

Or see this region's nucleotide sequence