Strain Fitness in Pseudomonas simiae WCS417 around PS417_22825

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22820 and PS417_22825 are separated by 20 nucleotidesPS417_22825 and PS417_22830 are separated by 130 nucleotides PS417_22820: PS417_22820 - proline--tRNA ligase, at 4,944,310 to 4,946,025 _22820 PS417_22825: PS417_22825 - hypothetical protein, at 4,946,046 to 4,946,999 _22825 PS417_22830: PS417_22830 - DNA polymerase IV, at 4,947,130 to 4,948,188 _22830 Position (kb) 4946 4947Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4946.195 kb on - strand, within PS417_22825at 4946.298 kb on + strand, within PS417_22825at 4946.389 kb on + strand, within PS417_22825at 4946.439 kb on + strand, within PS417_22825at 4946.439 kb on + strand, within PS417_22825at 4946.544 kb on + strand, within PS417_22825at 4946.834 kb on - strand, within PS417_22825at 4947.015 kb on - strandat 4947.016 kb on + strandat 4947.016 kb on + strandat 4947.017 kb on - strandat 4947.068 kb on + strandat 4947.166 kb on + strandat 4947.167 kb on - strandat 4947.248 kb on + strand, within PS417_22830at 4947.342 kb on - strand, within PS417_22830at 4947.363 kb on + strand, within PS417_22830at 4947.363 kb on + strand, within PS417_22830at 4947.363 kb on + strand, within PS417_22830at 4947.363 kb on + strand, within PS417_22830at 4947.364 kb on - strand, within PS417_22830at 4947.395 kb on - strand, within PS417_22830at 4947.395 kb on - strand, within PS417_22830at 4947.395 kb on - strand, within PS417_22830at 4947.438 kb on - strand, within PS417_22830at 4947.438 kb on - strand, within PS417_22830at 4947.438 kb on - strand, within PS417_22830at 4947.455 kb on - strand, within PS417_22830at 4947.645 kb on + strand, within PS417_22830at 4947.807 kb on + strand, within PS417_22830at 4947.808 kb on - strand, within PS417_22830at 4947.867 kb on - strand, within PS417_22830at 4947.867 kb on - strand, within PS417_22830at 4947.905 kb on + strand, within PS417_22830at 4947.945 kb on + strand, within PS417_22830at 4947.945 kb on + strand, within PS417_22830at 4947.945 kb on + strand, within PS417_22830at 4947.945 kb on + strand, within PS417_22830at 4947.947 kb on + strand, within PS417_22830at 4947.947 kb on + strand, within PS417_22830at 4947.947 kb on + strand, within PS417_22830at 4947.948 kb on - strand, within PS417_22830at 4947.948 kb on - strand, within PS417_22830at 4947.948 kb on - strand, within PS417_22830

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,946,195 - PS417_22825 0.16 +3.1
4,946,298 + PS417_22825 0.26 +0.7
4,946,389 + PS417_22825 0.36 +0.5
4,946,439 + PS417_22825 0.41 +1.1
4,946,439 + PS417_22825 0.41 -2.3
4,946,544 + PS417_22825 0.52 +0.6
4,946,834 - PS417_22825 0.83 +0.8
4,947,015 - -0.9
4,947,016 + +1.0
4,947,016 + +1.0
4,947,017 - +0.2
4,947,068 + +1.4
4,947,166 + +0.5
4,947,167 - -0.6
4,947,248 + PS417_22830 0.11 -0.7
4,947,342 - PS417_22830 0.20 +1.0
4,947,363 + PS417_22830 0.22 +0.8
4,947,363 + PS417_22830 0.22 -1.8
4,947,363 + PS417_22830 0.22 +0.4
4,947,363 + PS417_22830 0.22 +0.7
4,947,364 - PS417_22830 0.22 -0.5
4,947,395 - PS417_22830 0.25 +0.3
4,947,395 - PS417_22830 0.25 +1.5
4,947,395 - PS417_22830 0.25 -0.4
4,947,438 - PS417_22830 0.29 +0.2
4,947,438 - PS417_22830 0.29 -2.1
4,947,438 - PS417_22830 0.29 +0.3
4,947,455 - PS417_22830 0.31 +0.0
4,947,645 + PS417_22830 0.49 +0.9
4,947,807 + PS417_22830 0.64 +0.2
4,947,808 - PS417_22830 0.64 -0.1
4,947,867 - PS417_22830 0.70 +0.8
4,947,867 - PS417_22830 0.70 +0.1
4,947,905 + PS417_22830 0.73 +0.2
4,947,945 + PS417_22830 0.77 +3.9
4,947,945 + PS417_22830 0.77 -0.0
4,947,945 + PS417_22830 0.77 +1.5
4,947,945 + PS417_22830 0.77 -1.0
4,947,947 + PS417_22830 0.77 -0.9
4,947,947 + PS417_22830 0.77 +0.1
4,947,947 + PS417_22830 0.77 +0.1
4,947,948 - PS417_22830 0.77 -0.6
4,947,948 - PS417_22830 0.77 -0.2
4,947,948 - PS417_22830 0.77 +0.0

Or see this region's nucleotide sequence