Strain Fitness in Pseudomonas simiae WCS417 around PS417_20375

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20370 and PS417_20375 are separated by 409 nucleotidesPS417_20375 and PS417_20380 are separated by 774 nucleotides PS417_20370: PS417_20370 - haloacid dehalogenase, at 4,419,460 to 4,420,116 _20370 PS417_20375: PS417_20375 - hypothetical protein, at 4,420,526 to 4,420,867 _20375 PS417_20380: PS417_20380 - hypothetical protein, at 4,421,642 to 4,422,016 _20380 Position (kb) 4420 4421Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4419.546 kb on + strand, within PS417_20370at 4419.639 kb on + strand, within PS417_20370at 4419.668 kb on - strand, within PS417_20370at 4419.725 kb on + strand, within PS417_20370at 4419.725 kb on + strand, within PS417_20370at 4419.726 kb on - strand, within PS417_20370at 4419.726 kb on - strand, within PS417_20370at 4419.726 kb on - strand, within PS417_20370at 4419.726 kb on - strand, within PS417_20370at 4419.726 kb on - strand, within PS417_20370at 4419.726 kb on - strand, within PS417_20370at 4419.779 kb on + strand, within PS417_20370at 4419.829 kb on + strand, within PS417_20370at 4419.830 kb on - strand, within PS417_20370at 4419.833 kb on - strand, within PS417_20370at 4419.833 kb on - strand, within PS417_20370at 4419.860 kb on + strand, within PS417_20370at 4419.861 kb on - strand, within PS417_20370at 4419.861 kb on - strand, within PS417_20370at 4419.861 kb on - strand, within PS417_20370at 4419.861 kb on - strand, within PS417_20370at 4420.117 kb on - strandat 4420.158 kb on + strandat 4420.159 kb on - strandat 4420.175 kb on + strandat 4420.175 kb on + strandat 4420.175 kb on + strandat 4420.176 kb on - strandat 4420.176 kb on - strandat 4420.178 kb on + strandat 4420.178 kb on + strandat 4420.200 kb on + strandat 4420.201 kb on - strandat 4420.201 kb on - strandat 4420.277 kb on + strandat 4420.277 kb on + strandat 4420.277 kb on + strandat 4420.277 kb on + strandat 4420.278 kb on - strandat 4420.435 kb on + strandat 4420.436 kb on - strandat 4420.436 kb on - strandat 4420.438 kb on + strandat 4420.439 kb on - strandat 4420.439 kb on - strandat 4420.439 kb on - strandat 4420.451 kb on - strandat 4420.451 kb on - strandat 4420.454 kb on - strandat 4420.554 kb on - strandat 4420.554 kb on - strandat 4420.554 kb on - strandat 4420.583 kb on + strand, within PS417_20375at 4420.584 kb on - strand, within PS417_20375at 4420.599 kb on + strand, within PS417_20375at 4420.599 kb on + strand, within PS417_20375at 4420.612 kb on + strand, within PS417_20375at 4420.759 kb on + strand, within PS417_20375at 4420.759 kb on + strand, within PS417_20375at 4420.760 kb on - strand, within PS417_20375at 4420.760 kb on - strand, within PS417_20375at 4420.769 kb on + strand, within PS417_20375at 4420.770 kb on - strand, within PS417_20375at 4420.908 kb on + strandat 4420.919 kb on + strandat 4420.942 kb on + strandat 4420.954 kb on + strandat 4421.088 kb on - strandat 4421.089 kb on + strandat 4421.090 kb on - strandat 4421.091 kb on + strandat 4421.094 kb on - strandat 4421.113 kb on - strandat 4421.125 kb on + strandat 4421.126 kb on - strandat 4421.235 kb on - strandat 4421.270 kb on - strandat 4421.281 kb on + strandat 4421.281 kb on + strandat 4421.282 kb on - strandat 4421.293 kb on + strandat 4421.325 kb on + strandat 4421.327 kb on + strandat 4421.327 kb on + strandat 4421.327 kb on + strandat 4421.327 kb on + strandat 4421.328 kb on - strandat 4421.328 kb on - strandat 4421.466 kb on + strandat 4421.549 kb on + strandat 4421.549 kb on + strandat 4421.550 kb on - strandat 4421.550 kb on - strandat 4421.550 kb on - strandat 4421.581 kb on + strandat 4421.581 kb on + strandat 4421.581 kb on + strandat 4421.643 kb on + strandat 4421.643 kb on + strandat 4421.643 kb on + strandat 4421.684 kb on + strand, within PS417_20380at 4421.685 kb on - strand, within PS417_20380at 4421.777 kb on + strand, within PS417_20380at 4421.778 kb on - strand, within PS417_20380at 4421.785 kb on + strand, within PS417_20380at 4421.819 kb on + strand, within PS417_20380at 4421.819 kb on + strand, within PS417_20380at 4421.820 kb on - strand, within PS417_20380at 4421.848 kb on + strand, within PS417_20380

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,419,546 + PS417_20370 0.13 -1.5
4,419,639 + PS417_20370 0.27 +0.1
4,419,668 - PS417_20370 0.32 -2.4
4,419,725 + PS417_20370 0.40 -1.8
4,419,725 + PS417_20370 0.40 -0.3
4,419,726 - PS417_20370 0.40 +1.0
4,419,726 - PS417_20370 0.40 -1.8
4,419,726 - PS417_20370 0.40 -1.0
4,419,726 - PS417_20370 0.40 -0.4
4,419,726 - PS417_20370 0.40 -0.1
4,419,726 - PS417_20370 0.40 +0.1
4,419,779 + PS417_20370 0.49 -0.2
4,419,829 + PS417_20370 0.56 -0.4
4,419,830 - PS417_20370 0.56 +0.9
4,419,833 - PS417_20370 0.57 -0.3
4,419,833 - PS417_20370 0.57 -0.8
4,419,860 + PS417_20370 0.61 +1.3
4,419,861 - PS417_20370 0.61 +0.4
4,419,861 - PS417_20370 0.61 +0.3
4,419,861 - PS417_20370 0.61 +0.7
4,419,861 - PS417_20370 0.61 +0.6
4,420,117 - -0.2
4,420,158 + -0.8
4,420,159 - +0.6
4,420,175 + -1.5
4,420,175 + +1.0
4,420,175 + +0.6
4,420,176 - -0.7
4,420,176 - +1.5
4,420,178 + +0.8
4,420,178 + +0.6
4,420,200 + +1.2
4,420,201 - +2.1
4,420,201 - +1.0
4,420,277 + -3.6
4,420,277 + +2.0
4,420,277 + +0.0
4,420,277 + -0.9
4,420,278 - -0.8
4,420,435 + -0.8
4,420,436 - +0.6
4,420,436 - +0.4
4,420,438 + +0.6
4,420,439 - +1.5
4,420,439 - +1.6
4,420,439 - -1.0
4,420,451 - +0.3
4,420,451 - +0.8
4,420,454 - +0.6
4,420,554 - -0.4
4,420,554 - +0.3
4,420,554 - +0.4
4,420,583 + PS417_20375 0.17 -3.1
4,420,584 - PS417_20375 0.17 -1.6
4,420,599 + PS417_20375 0.21 +0.6
4,420,599 + PS417_20375 0.21 -0.1
4,420,612 + PS417_20375 0.25 -1.4
4,420,759 + PS417_20375 0.68 +0.6
4,420,759 + PS417_20375 0.68 -0.7
4,420,760 - PS417_20375 0.68 -0.2
4,420,760 - PS417_20375 0.68 -2.9
4,420,769 + PS417_20375 0.71 -0.8
4,420,770 - PS417_20375 0.71 +0.4
4,420,908 + +0.4
4,420,919 + +1.8
4,420,942 + +0.4
4,420,954 + -0.1
4,421,088 - -0.4
4,421,089 + +0.4
4,421,090 - +0.1
4,421,091 + -1.4
4,421,094 - +0.1
4,421,113 - +1.0
4,421,125 + -0.4
4,421,126 - +0.9
4,421,235 - -1.7
4,421,270 - +0.7
4,421,281 + -0.6
4,421,281 + +0.3
4,421,282 - -0.3
4,421,293 + +0.1
4,421,325 + -1.6
4,421,327 + +0.7
4,421,327 + -0.8
4,421,327 + +0.4
4,421,327 + -2.3
4,421,328 - -0.2
4,421,328 - +0.9
4,421,466 + -1.6
4,421,549 + -1.9
4,421,549 + +0.1
4,421,550 - -1.7
4,421,550 - -1.4
4,421,550 - +1.4
4,421,581 + -3.1
4,421,581 + +0.4
4,421,581 + -2.8
4,421,643 + +1.3
4,421,643 + -0.6
4,421,643 + -0.9
4,421,684 + PS417_20380 0.11 +0.6
4,421,685 - PS417_20380 0.11 +2.4
4,421,777 + PS417_20380 0.36 +1.7
4,421,778 - PS417_20380 0.36 -1.7
4,421,785 + PS417_20380 0.38 -0.7
4,421,819 + PS417_20380 0.47 +0.0
4,421,819 + PS417_20380 0.47 -0.5
4,421,820 - PS417_20380 0.47 -2.7
4,421,848 + PS417_20380 0.55 +1.9

Or see this region's nucleotide sequence