Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20370 and PS417_20375 are separated by 409 nucleotides PS417_20375 and PS417_20380 are separated by 774 nucleotides
PS417_20370: PS417_20370 - haloacid dehalogenase, at 4,419,460 to 4,420,116
_20370
PS417_20375: PS417_20375 - hypothetical protein, at 4,420,526 to 4,420,867
_20375
PS417_20380: PS417_20380 - hypothetical protein, at 4,421,642 to 4,422,016
_20380
Position (kb)
4420
4421 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4419.546 kb on + strand, within PS417_20370 at 4419.639 kb on + strand, within PS417_20370 at 4419.668 kb on - strand, within PS417_20370 at 4419.725 kb on + strand, within PS417_20370 at 4419.725 kb on + strand, within PS417_20370 at 4419.726 kb on - strand, within PS417_20370 at 4419.726 kb on - strand, within PS417_20370 at 4419.726 kb on - strand, within PS417_20370 at 4419.726 kb on - strand, within PS417_20370 at 4419.726 kb on - strand, within PS417_20370 at 4419.726 kb on - strand, within PS417_20370 at 4419.779 kb on + strand, within PS417_20370 at 4419.829 kb on + strand, within PS417_20370 at 4419.830 kb on - strand, within PS417_20370 at 4419.833 kb on - strand, within PS417_20370 at 4419.833 kb on - strand, within PS417_20370 at 4419.860 kb on + strand, within PS417_20370 at 4419.861 kb on - strand, within PS417_20370 at 4419.861 kb on - strand, within PS417_20370 at 4419.861 kb on - strand, within PS417_20370 at 4419.861 kb on - strand, within PS417_20370 at 4420.117 kb on - strand at 4420.158 kb on + strand at 4420.159 kb on - strand at 4420.175 kb on + strand at 4420.175 kb on + strand at 4420.175 kb on + strand at 4420.176 kb on - strand at 4420.176 kb on - strand at 4420.178 kb on + strand at 4420.178 kb on + strand at 4420.200 kb on + strand at 4420.201 kb on - strand at 4420.201 kb on - strand at 4420.277 kb on + strand at 4420.277 kb on + strand at 4420.277 kb on + strand at 4420.277 kb on + strand at 4420.278 kb on - strand at 4420.435 kb on + strand at 4420.436 kb on - strand at 4420.436 kb on - strand at 4420.438 kb on + strand at 4420.439 kb on - strand at 4420.439 kb on - strand at 4420.439 kb on - strand at 4420.451 kb on - strand at 4420.451 kb on - strand at 4420.454 kb on - strand at 4420.554 kb on - strand at 4420.554 kb on - strand at 4420.554 kb on - strand at 4420.583 kb on + strand, within PS417_20375 at 4420.584 kb on - strand, within PS417_20375 at 4420.599 kb on + strand, within PS417_20375 at 4420.599 kb on + strand, within PS417_20375 at 4420.612 kb on + strand, within PS417_20375 at 4420.759 kb on + strand, within PS417_20375 at 4420.759 kb on + strand, within PS417_20375 at 4420.760 kb on - strand, within PS417_20375 at 4420.760 kb on - strand, within PS417_20375 at 4420.769 kb on + strand, within PS417_20375 at 4420.770 kb on - strand, within PS417_20375 at 4420.908 kb on + strand at 4420.919 kb on + strand at 4420.942 kb on + strand at 4420.954 kb on + strand at 4421.088 kb on - strand at 4421.089 kb on + strand at 4421.090 kb on - strand at 4421.091 kb on + strand at 4421.094 kb on - strand at 4421.113 kb on - strand at 4421.125 kb on + strand at 4421.126 kb on - strand at 4421.235 kb on - strand at 4421.270 kb on - strand at 4421.281 kb on + strand at 4421.281 kb on + strand at 4421.282 kb on - strand at 4421.293 kb on + strand at 4421.325 kb on + strand at 4421.327 kb on + strand at 4421.327 kb on + strand at 4421.327 kb on + strand at 4421.327 kb on + strand at 4421.328 kb on - strand at 4421.328 kb on - strand at 4421.466 kb on + strand at 4421.549 kb on + strand at 4421.549 kb on + strand at 4421.550 kb on - strand at 4421.550 kb on - strand at 4421.550 kb on - strand at 4421.581 kb on + strand at 4421.581 kb on + strand at 4421.581 kb on + strand at 4421.643 kb on + strand at 4421.643 kb on + strand at 4421.643 kb on + strand at 4421.684 kb on + strand, within PS417_20380 at 4421.685 kb on - strand, within PS417_20380 at 4421.777 kb on + strand, within PS417_20380 at 4421.778 kb on - strand, within PS417_20380 at 4421.785 kb on + strand, within PS417_20380 at 4421.819 kb on + strand, within PS417_20380 at 4421.819 kb on + strand, within PS417_20380 at 4421.820 kb on - strand, within PS417_20380 at 4421.848 kb on + strand, within PS417_20380
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,419,546 + PS417_20370 0.13 -1.5 4,419,639 + PS417_20370 0.27 +0.1 4,419,668 - PS417_20370 0.32 -2.4 4,419,725 + PS417_20370 0.40 -1.8 4,419,725 + PS417_20370 0.40 -0.3 4,419,726 - PS417_20370 0.40 +1.0 4,419,726 - PS417_20370 0.40 -1.8 4,419,726 - PS417_20370 0.40 -1.0 4,419,726 - PS417_20370 0.40 -0.4 4,419,726 - PS417_20370 0.40 -0.1 4,419,726 - PS417_20370 0.40 +0.1 4,419,779 + PS417_20370 0.49 -0.2 4,419,829 + PS417_20370 0.56 -0.4 4,419,830 - PS417_20370 0.56 +0.9 4,419,833 - PS417_20370 0.57 -0.3 4,419,833 - PS417_20370 0.57 -0.8 4,419,860 + PS417_20370 0.61 +1.3 4,419,861 - PS417_20370 0.61 +0.4 4,419,861 - PS417_20370 0.61 +0.3 4,419,861 - PS417_20370 0.61 +0.7 4,419,861 - PS417_20370 0.61 +0.6 4,420,117 - -0.2 4,420,158 + -0.8 4,420,159 - +0.6 4,420,175 + -1.5 4,420,175 + +1.0 4,420,175 + +0.6 4,420,176 - -0.7 4,420,176 - +1.5 4,420,178 + +0.8 4,420,178 + +0.6 4,420,200 + +1.2 4,420,201 - +2.1 4,420,201 - +1.0 4,420,277 + -3.6 4,420,277 + +2.0 4,420,277 + +0.0 4,420,277 + -0.9 4,420,278 - -0.8 4,420,435 + -0.8 4,420,436 - +0.6 4,420,436 - +0.4 4,420,438 + +0.6 4,420,439 - +1.5 4,420,439 - +1.6 4,420,439 - -1.0 4,420,451 - +0.3 4,420,451 - +0.8 4,420,454 - +0.6 4,420,554 - -0.4 4,420,554 - +0.3 4,420,554 - +0.4 4,420,583 + PS417_20375 0.17 -3.1 4,420,584 - PS417_20375 0.17 -1.6 4,420,599 + PS417_20375 0.21 +0.6 4,420,599 + PS417_20375 0.21 -0.1 4,420,612 + PS417_20375 0.25 -1.4 4,420,759 + PS417_20375 0.68 +0.6 4,420,759 + PS417_20375 0.68 -0.7 4,420,760 - PS417_20375 0.68 -0.2 4,420,760 - PS417_20375 0.68 -2.9 4,420,769 + PS417_20375 0.71 -0.8 4,420,770 - PS417_20375 0.71 +0.4 4,420,908 + +0.4 4,420,919 + +1.8 4,420,942 + +0.4 4,420,954 + -0.1 4,421,088 - -0.4 4,421,089 + +0.4 4,421,090 - +0.1 4,421,091 + -1.4 4,421,094 - +0.1 4,421,113 - +1.0 4,421,125 + -0.4 4,421,126 - +0.9 4,421,235 - -1.7 4,421,270 - +0.7 4,421,281 + -0.6 4,421,281 + +0.3 4,421,282 - -0.3 4,421,293 + +0.1 4,421,325 + -1.6 4,421,327 + +0.7 4,421,327 + -0.8 4,421,327 + +0.4 4,421,327 + -2.3 4,421,328 - -0.2 4,421,328 - +0.9 4,421,466 + -1.6 4,421,549 + -1.9 4,421,549 + +0.1 4,421,550 - -1.7 4,421,550 - -1.4 4,421,550 - +1.4 4,421,581 + -3.1 4,421,581 + +0.4 4,421,581 + -2.8 4,421,643 + +1.3 4,421,643 + -0.6 4,421,643 + -0.9 4,421,684 + PS417_20380 0.11 +0.6 4,421,685 - PS417_20380 0.11 +2.4 4,421,777 + PS417_20380 0.36 +1.7 4,421,778 - PS417_20380 0.36 -1.7 4,421,785 + PS417_20380 0.38 -0.7 4,421,819 + PS417_20380 0.47 +0.0 4,421,819 + PS417_20380 0.47 -0.5 4,421,820 - PS417_20380 0.47 -2.7 4,421,848 + PS417_20380 0.55 +1.9
Or see this region's nucleotide sequence