Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17010 and PS417_17015 are separated by 151 nucleotides PS417_17015 and PS417_17020 are separated by 11 nucleotides
PS417_17010: PS417_17010 - AMP-binding protein, at 3,715,786 to 3,717,420
_17010
PS417_17015: PS417_17015 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) , at 3,717,572 to 3,718,735
_17015
PS417_17020: PS417_17020 - methylcrotonoyl-CoA carboxylase, at 3,718,747 to 3,720,354
_17020
Position (kb)
3717
3718
3719 Strain fitness (log2 ratio)
-2
-1
0
1 at 3716.645 kb on + strand, within PS417_17010 at 3716.709 kb on - strand, within PS417_17010 at 3716.709 kb on - strand, within PS417_17010 at 3716.771 kb on + strand, within PS417_17010 at 3716.771 kb on + strand, within PS417_17010 at 3716.772 kb on - strand, within PS417_17010 at 3716.840 kb on + strand, within PS417_17010 at 3716.841 kb on - strand, within PS417_17010 at 3716.841 kb on - strand, within PS417_17010 at 3717.084 kb on - strand, within PS417_17010 at 3717.217 kb on - strand, within PS417_17010 at 3717.399 kb on - strand at 3717.456 kb on - strand at 3717.461 kb on + strand at 3717.558 kb on + strand at 3717.558 kb on + strand at 3717.915 kb on - strand, within PS417_17015 at 3718.082 kb on + strand, within PS417_17015 at 3718.376 kb on + strand, within PS417_17015 at 3718.451 kb on + strand, within PS417_17015 at 3718.452 kb on - strand, within PS417_17015 at 3718.615 kb on + strand, within PS417_17015 at 3718.616 kb on - strand, within PS417_17015 at 3718.616 kb on - strand, within PS417_17015 at 3718.661 kb on + strand at 3719.167 kb on + strand, within PS417_17020 at 3719.578 kb on - strand, within PS417_17020
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,716,645 + PS417_17010 0.53 +0.3 3,716,709 - PS417_17010 0.56 +1.4 3,716,709 - PS417_17010 0.56 +0.6 3,716,771 + PS417_17010 0.60 -0.0 3,716,771 + PS417_17010 0.60 +0.2 3,716,772 - PS417_17010 0.60 +0.2 3,716,840 + PS417_17010 0.64 +1.5 3,716,841 - PS417_17010 0.65 -0.3 3,716,841 - PS417_17010 0.65 -0.7 3,717,084 - PS417_17010 0.79 +0.5 3,717,217 - PS417_17010 0.88 +1.4 3,717,399 - -0.2 3,717,456 - +0.2 3,717,461 + -0.9 3,717,558 + +0.2 3,717,558 + -1.3 3,717,915 - PS417_17015 0.29 -2.4 3,718,082 + PS417_17015 0.44 -2.4 3,718,376 + PS417_17015 0.69 -2.5 3,718,451 + PS417_17015 0.76 -0.5 3,718,452 - PS417_17015 0.76 -0.1 3,718,615 + PS417_17015 0.90 -0.9 3,718,616 - PS417_17015 0.90 +0.0 3,718,616 - PS417_17015 0.90 -0.6 3,718,661 + -0.6 3,719,167 + PS417_17020 0.26 -1.3 3,719,578 - PS417_17020 0.52 -2.3
Or see this region's nucleotide sequence