Strain Fitness in Pseudomonas simiae WCS417 around PS417_15675

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15660 and PS417_15665 are separated by 65 nucleotidesPS417_15665 and PS417_15670 overlap by 12 nucleotidesPS417_15670 and PS417_15675 are separated by 163 nucleotidesPS417_15675 and PS417_15680 are separated by 70 nucleotidesPS417_15680 and PS417_15685 are separated by 23 nucleotidesPS417_15685 and PS417_15690 are separated by 63 nucleotides PS417_15660: PS417_15660 - hemerythrin, at 3,433,353 to 3,433,829 _15660 PS417_15665: PS417_15665 - hypothetical protein, at 3,433,895 to 3,434,173 _15665 PS417_15670: PS417_15670 - hypothetical protein, at 3,434,162 to 3,434,371 _15670 PS417_15675: PS417_15675 - chemotaxis protein, at 3,434,535 to 3,436,154 _15675 PS417_15680: PS417_15680 - radical SAM protein, at 3,436,225 to 3,436,893 _15680 PS417_15685: PS417_15685 - oxidoreductase, at 3,436,917 to 3,437,072 _15685 PS417_15690: PS417_15690 - ribonucleoside-triphosphate reductase, at 3,437,136 to 3,439,124 _15690 Position (kb) 3434 3435 3436 3437Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 3433.560 kb on + strand, within PS417_15660at 3433.560 kb on + strand, within PS417_15660at 3433.560 kb on + strand, within PS417_15660at 3433.560 kb on + strand, within PS417_15660at 3433.561 kb on - strand, within PS417_15660at 3433.561 kb on - strand, within PS417_15660at 3433.561 kb on - strandat 3433.725 kb on - strand, within PS417_15660at 3433.856 kb on - strandat 3434.077 kb on + strand, within PS417_15665at 3434.132 kb on - strand, within PS417_15665at 3434.152 kb on + strandat 3434.153 kb on - strandat 3434.226 kb on + strand, within PS417_15670at 3434.227 kb on - strand, within PS417_15670at 3434.406 kb on + strandat 3434.744 kb on + strand, within PS417_15675at 3435.616 kb on + strand, within PS417_15675at 3435.616 kb on + strand, within PS417_15675at 3435.796 kb on + strand, within PS417_15675at 3435.796 kb on + strand, within PS417_15675at 3435.796 kb on + strand, within PS417_15675at 3436.075 kb on + strandat 3436.075 kb on + strandat 3437.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,433,560 + PS417_15660 0.43 +0.8
3,433,560 + PS417_15660 0.43 +0.0
3,433,560 + PS417_15660 0.43 -0.8
3,433,560 + PS417_15660 0.43 -1.4
3,433,561 - PS417_15660 0.44 +0.5
3,433,561 - PS417_15660 0.44 +0.3
3,433,561 - +2.0
3,433,725 - PS417_15660 0.78 -0.2
3,433,856 - +0.2
3,434,077 + PS417_15665 0.65 +0.1
3,434,132 - PS417_15665 0.85 -0.4
3,434,152 + +0.7
3,434,153 - -0.3
3,434,226 + PS417_15670 0.30 +0.2
3,434,227 - PS417_15670 0.31 -1.8
3,434,406 + -1.4
3,434,744 + PS417_15675 0.13 -0.9
3,435,616 + PS417_15675 0.67 -0.7
3,435,616 + PS417_15675 0.67 -2.8
3,435,796 + PS417_15675 0.78 -2.0
3,435,796 + PS417_15675 0.78 -1.0
3,435,796 + PS417_15675 0.78 -1.1
3,436,075 + -1.7
3,436,075 + -1.4
3,437,114 - +6.7

Or see this region's nucleotide sequence