Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00010 and PS417_00015 are separated by 20 nucleotides PS417_00015 and PS417_00020 are separated by 4 nucleotides
PS417_00010: PS417_00010 - DNA polymerase III subunit beta, at 1,781 to 2,884
_00010
PS417_00015: PS417_00015 - recombinase RecF, at 2,905 to 4,008
_00015
PS417_00020: PS417_00020 - DNA gyrase subunit B, at 4,013 to 6,430
_00020
Position (kb)
2
3
4
5 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2.902 kb on + strand at 2.902 kb on + strand at 2.902 kb on + strand at 2.903 kb on - strand at 2.903 kb on - strand at 3.147 kb on + strand, within PS417_00015 at 3.148 kb on - strand, within PS417_00015 at 3.148 kb on - strand, within PS417_00015 at 3.473 kb on + strand, within PS417_00015 at 3.473 kb on + strand, within PS417_00015 at 3.493 kb on + strand, within PS417_00015 at 3.493 kb on + strand, within PS417_00015 at 3.495 kb on + strand, within PS417_00015 at 3.495 kb on + strand, within PS417_00015 at 3.495 kb on + strand, within PS417_00015 at 3.684 kb on + strand, within PS417_00015 at 3.801 kb on + strand, within PS417_00015 at 3.801 kb on + strand, within PS417_00015 at 3.801 kb on + strand, within PS417_00015 at 3.801 kb on + strand, within PS417_00015 at 3.805 kb on + strand, within PS417_00015 at 3.878 kb on + strand, within PS417_00015 at 3.878 kb on + strand, within PS417_00015 at 3.917 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,902 + -0.3 2,902 + -1.7 2,902 + -2.9 2,903 - -0.6 2,903 - -2.0 3,147 + PS417_00015 0.22 -0.2 3,148 - PS417_00015 0.22 -2.1 3,148 - PS417_00015 0.22 -0.1 3,473 + PS417_00015 0.51 -0.3 3,473 + PS417_00015 0.51 -3.0 3,493 + PS417_00015 0.53 +1.3 3,493 + PS417_00015 0.53 -1.2 3,495 + PS417_00015 0.53 -1.0 3,495 + PS417_00015 0.53 -0.1 3,495 + PS417_00015 0.53 -0.8 3,684 + PS417_00015 0.71 -2.4 3,801 + PS417_00015 0.81 -0.1 3,801 + PS417_00015 0.81 -1.9 3,801 + PS417_00015 0.81 +1.1 3,801 + PS417_00015 0.81 -2.0 3,805 + PS417_00015 0.82 +0.6 3,878 + PS417_00015 0.88 -0.7 3,878 + PS417_00015 0.88 -1.3 3,917 + -0.8
Or see this region's nucleotide sequence