Strain Fitness in Pseudomonas simiae WCS417 around PS417_14810

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14800 and PS417_14805 overlap by 8 nucleotidesPS417_14805 and PS417_14810 are separated by 98 nucleotidesPS417_14810 and PS417_14815 are separated by 109 nucleotides PS417_14800: PS417_14800 - diguanylate cyclase, at 3,233,767 to 3,236,349 _14800 PS417_14805: PS417_14805 - AraC family transcriptional regulator, at 3,236,342 to 3,237,163 _14805 PS417_14810: PS417_14810 - Fosmidomycin resistance protein, at 3,237,262 to 3,238,473 _14810 PS417_14815: PS417_14815 - diguanylate cyclase, at 3,238,583 to 3,239,749 _14815 Position (kb) 3237 3238 3239Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3236.564 kb on + strand, within PS417_14805at 3236.565 kb on - strand, within PS417_14805at 3237.176 kb on + strandat 3237.249 kb on - strandat 3237.419 kb on - strand, within PS417_14810at 3237.973 kb on + strandat 3238.012 kb on + strand, within PS417_14810at 3238.013 kb on - strand, within PS417_14810at 3238.237 kb on - strand, within PS417_14810at 3238.271 kb on - strand, within PS417_14810at 3238.397 kb on - strandat 3238.540 kb on - strandat 3238.540 kb on - strandat 3238.918 kb on - strand, within PS417_14815at 3239.063 kb on + strand, within PS417_14815at 3239.063 kb on + strand, within PS417_14815at 3239.064 kb on - strandat 3239.264 kb on + strand, within PS417_14815

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,236,564 + PS417_14805 0.27 -3.7
3,236,565 - PS417_14805 0.27 -2.0
3,237,176 + -1.1
3,237,249 - +0.4
3,237,419 - PS417_14810 0.13 +3.2
3,237,973 + +2.7
3,238,012 + PS417_14810 0.62 +2.0
3,238,013 - PS417_14810 0.62 +0.1
3,238,237 - PS417_14810 0.80 +0.2
3,238,271 - PS417_14810 0.83 +0.3
3,238,397 - +0.3
3,238,540 - -0.7
3,238,540 - +0.2
3,238,918 - PS417_14815 0.29 -0.3
3,239,063 + PS417_14815 0.41 -1.4
3,239,063 + PS417_14815 0.41 +0.1
3,239,064 - +1.2
3,239,264 + PS417_14815 0.58 +1.5

Or see this region's nucleotide sequence