Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14800 and PS417_14805 overlap by 8 nucleotides PS417_14805 and PS417_14810 are separated by 98 nucleotides PS417_14810 and PS417_14815 are separated by 109 nucleotides
PS417_14800: PS417_14800 - diguanylate cyclase, at 3,233,767 to 3,236,349
_14800
PS417_14805: PS417_14805 - AraC family transcriptional regulator, at 3,236,342 to 3,237,163
_14805
PS417_14810: PS417_14810 - Fosmidomycin resistance protein, at 3,237,262 to 3,238,473
_14810
PS417_14815: PS417_14815 - diguanylate cyclase, at 3,238,583 to 3,239,749
_14815
Position (kb)
3237
3238
3239 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3236.564 kb on + strand, within PS417_14805 at 3236.565 kb on - strand, within PS417_14805 at 3237.176 kb on + strand at 3237.249 kb on - strand at 3237.419 kb on - strand, within PS417_14810 at 3237.973 kb on + strand at 3238.012 kb on + strand, within PS417_14810 at 3238.013 kb on - strand, within PS417_14810 at 3238.237 kb on - strand, within PS417_14810 at 3238.271 kb on - strand, within PS417_14810 at 3238.397 kb on - strand at 3238.540 kb on - strand at 3238.540 kb on - strand at 3238.918 kb on - strand, within PS417_14815 at 3239.063 kb on + strand, within PS417_14815 at 3239.063 kb on + strand, within PS417_14815 at 3239.064 kb on - strand at 3239.264 kb on + strand, within PS417_14815
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,236,564 + PS417_14805 0.27 -3.7 3,236,565 - PS417_14805 0.27 -2.0 3,237,176 + -1.1 3,237,249 - +0.4 3,237,419 - PS417_14810 0.13 +3.2 3,237,973 + +2.7 3,238,012 + PS417_14810 0.62 +2.0 3,238,013 - PS417_14810 0.62 +0.1 3,238,237 - PS417_14810 0.80 +0.2 3,238,271 - PS417_14810 0.83 +0.3 3,238,397 - +0.3 3,238,540 - -0.7 3,238,540 - +0.2 3,238,918 - PS417_14815 0.29 -0.3 3,239,063 + PS417_14815 0.41 -1.4 3,239,063 + PS417_14815 0.41 +0.1 3,239,064 - +1.2 3,239,264 + PS417_14815 0.58 +1.5
Or see this region's nucleotide sequence