Strain Fitness in Pseudomonas simiae WCS417 around PS417_14540

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_14535 and PS417_14540 overlap by 1 nucleotidesPS417_14540 and PS417_14545 overlap by 28 nucleotides PS417_14535: PS417_14535 - alpha/beta hydrolase, at 3,177,643 to 3,178,677 _14535 PS417_14540: PS417_14540 - cytochrome C oxidase subunit III, at 3,178,677 to 3,179,156 _14540 PS417_14545: PS417_14545 - amino acid transporter, at 3,179,129 to 3,180,526 _14545 Position (kb) 3178 3179 3180Strain fitness (log2 ratio) -2 -1 0 1 2at 3177.902 kb on - strand, within PS417_14535at 3177.902 kb on - strand, within PS417_14535at 3177.902 kb on - strand, within PS417_14535at 3177.902 kb on - strand, within PS417_14535at 3178.556 kb on - strand, within PS417_14535at 3178.579 kb on + strandat 3178.579 kb on + strandat 3178.691 kb on + strandat 3178.691 kb on + strandat 3178.692 kb on - strandat 3179.017 kb on - strand, within PS417_14540at 3179.361 kb on + strand, within PS417_14545at 3179.361 kb on + strand, within PS417_14545at 3179.362 kb on - strand, within PS417_14545at 3179.386 kb on + strand, within PS417_14545at 3179.387 kb on - strand, within PS417_14545at 3179.387 kb on - strand, within PS417_14545at 3179.492 kb on - strand, within PS417_14545at 3179.507 kb on - strand, within PS417_14545at 3179.943 kb on - strand, within PS417_14545at 3180.089 kb on + strand, within PS417_14545at 3180.089 kb on + strand, within PS417_14545at 3180.089 kb on + strand, within PS417_14545

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,177,902 - PS417_14535 0.25 +2.5
3,177,902 - PS417_14535 0.25 +0.9
3,177,902 - PS417_14535 0.25 +0.2
3,177,902 - PS417_14535 0.25 +0.8
3,178,556 - PS417_14535 0.88 +1.1
3,178,579 + +0.8
3,178,579 + -0.0
3,178,691 + -0.5
3,178,691 + -0.3
3,178,692 - -0.5
3,179,017 - PS417_14540 0.71 +0.1
3,179,361 + PS417_14545 0.17 -2.5
3,179,361 + PS417_14545 0.17 +1.6
3,179,362 - PS417_14545 0.17 -1.0
3,179,386 + PS417_14545 0.18 +0.6
3,179,387 - PS417_14545 0.18 -0.6
3,179,387 - PS417_14545 0.18 +0.1
3,179,492 - PS417_14545 0.26 +0.7
3,179,507 - PS417_14545 0.27 +0.9
3,179,943 - PS417_14545 0.58 +0.4
3,180,089 + PS417_14545 0.69 +1.9
3,180,089 + PS417_14545 0.69 +0.3
3,180,089 + PS417_14545 0.69 +0.7

Or see this region's nucleotide sequence