Strain Fitness in Pseudomonas simiae WCS417 around PS417_12700

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12695 and PS417_12700 are separated by 18 nucleotidesPS417_12700 and PS417_12705 are separated by 22 nucleotidesPS417_12705 and PS417_12710 are separated by 10 nucleotides PS417_12695: PS417_12695 - mannitol dehydrogenase, at 2,762,097 to 2,763,578 _12695 PS417_12700: PS417_12700 - ABC transporter for D-Mannitol and D-Sorbitol, ATPase component (from data), at 2,763,597 to 2,764,700 _12700 PS417_12705: PS417_12705 - ABC transporter for D-Mannitol and D-Sorbitol, permease component 1 (from data), at 2,764,723 to 2,765,553 _12705 PS417_12710: PS417_12710 - ABC transporter for D-Mannitol and D-Sorbitol, permease component 2 (from data), at 2,765,564 to 2,766,457 _12710 Position (kb) 2763 2764 2765Strain fitness (log2 ratio) -8 -7 -6 -5 -4 -3 -2 -1 0 1 2at 2763.026 kb on + strand, within PS417_12695at 2763.172 kb on + strand, within PS417_12695at 2763.323 kb on - strand, within PS417_12695at 2763.448 kb on + strandat 2763.449 kb on - strandat 2763.449 kb on - strandat 2763.507 kb on - strandat 2763.520 kb on + strandat 2764.037 kb on - strand, within PS417_12700at 2764.037 kb on - strand, within PS417_12700at 2764.136 kb on - strandat 2764.441 kb on + strand, within PS417_12700at 2764.450 kb on + strand, within PS417_12700at 2764.450 kb on + strand, within PS417_12700at 2764.451 kb on - strand, within PS417_12700at 2764.721 kb on + strandat 2764.724 kb on + strandat 2764.951 kb on + strand, within PS417_12705at 2764.952 kb on - strand, within PS417_12705at 2765.115 kb on - strand, within PS417_12705at 2765.271 kb on - strand, within PS417_12705at 2765.342 kb on + strand, within PS417_12705at 2765.342 kb on + strand, within PS417_12705at 2765.351 kb on + strand, within PS417_12705at 2765.352 kb on - strand, within PS417_12705at 2765.379 kb on - strand, within PS417_12705at 2765.379 kb on - strand, within PS417_12705at 2765.694 kb on + strand, within PS417_12710

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,763,026 + PS417_12695 0.63 -0.9
2,763,172 + PS417_12695 0.73 -1.6
2,763,323 - PS417_12695 0.83 +1.4
2,763,448 + -0.8
2,763,449 - -0.9
2,763,449 - +0.4
2,763,507 - +0.3
2,763,520 + -0.3
2,764,037 - PS417_12700 0.40 +2.2
2,764,037 - PS417_12700 0.40 +1.3
2,764,136 - +0.6
2,764,441 + PS417_12700 0.76 +1.1
2,764,450 + PS417_12700 0.77 +0.2
2,764,450 + PS417_12700 0.77 -0.9
2,764,451 - PS417_12700 0.77 +2.5
2,764,721 + +0.3
2,764,724 + -0.2
2,764,951 + PS417_12705 0.27 +0.4
2,764,952 - PS417_12705 0.28 -1.6
2,765,115 - PS417_12705 0.47 +0.2
2,765,271 - PS417_12705 0.66 -0.4
2,765,342 + PS417_12705 0.74 -0.1
2,765,342 + PS417_12705 0.74 -0.6
2,765,351 + PS417_12705 0.76 -1.5
2,765,352 - PS417_12705 0.76 -7.9
2,765,379 - PS417_12705 0.79 -0.0
2,765,379 - PS417_12705 0.79 +0.2
2,765,694 + PS417_12710 0.15 +1.3

Or see this region's nucleotide sequence