Strain Fitness in Pseudomonas simiae WCS417 around PS417_11110

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11105 and PS417_11110 are separated by 1 nucleotidesPS417_11110 and PS417_11115 are separated by 50 nucleotides PS417_11105: PS417_11105 - pyridine nucleotide-disulfide oxidoreductase, at 2,380,476 to 2,381,675 _11105 PS417_11110: PS417_11110 - xylose isomerase, at 2,381,677 to 2,382,495 _11110 PS417_11115: PS417_11115 - peroxidase, at 2,382,546 to 2,383,502 _11115 Position (kb) 2381 2382 2383Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2381.578 kb on + strandat 2381.578 kb on + strandat 2381.578 kb on + strandat 2381.578 kb on + strandat 2381.578 kb on + strandat 2381.791 kb on + strand, within PS417_11110at 2381.951 kb on + strandat 2381.952 kb on - strand, within PS417_11110at 2382.133 kb on + strand, within PS417_11110at 2382.134 kb on - strand, within PS417_11110at 2382.366 kb on + strand, within PS417_11110at 2382.367 kb on - strand, within PS417_11110at 2382.367 kb on - strand, within PS417_11110at 2382.969 kb on + strand, within PS417_11115at 2383.086 kb on + strand, within PS417_11115at 2383.087 kb on - strand, within PS417_11115at 2383.105 kb on - strand, within PS417_11115at 2383.112 kb on + strand, within PS417_11115at 2383.113 kb on - strand, within PS417_11115at 2383.323 kb on + strand, within PS417_11115at 2383.323 kb on + strand, within PS417_11115at 2383.404 kb on + strand, within PS417_11115at 2383.404 kb on + strand, within PS417_11115

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,381,578 + +0.2
2,381,578 + +0.7
2,381,578 + -1.7
2,381,578 + -0.7
2,381,578 + -0.2
2,381,791 + PS417_11110 0.14 -2.5
2,381,951 + +0.6
2,381,952 - PS417_11110 0.34 -1.5
2,382,133 + PS417_11110 0.56 +0.1
2,382,134 - PS417_11110 0.56 +1.8
2,382,366 + PS417_11110 0.84 +0.8
2,382,367 - PS417_11110 0.84 +0.1
2,382,367 - PS417_11110 0.84 +0.2
2,382,969 + PS417_11115 0.44 +0.3
2,383,086 + PS417_11115 0.56 +0.3
2,383,087 - PS417_11115 0.57 +2.0
2,383,105 - PS417_11115 0.58 +0.6
2,383,112 + PS417_11115 0.59 +0.0
2,383,113 - PS417_11115 0.59 +2.8
2,383,323 + PS417_11115 0.81 +0.7
2,383,323 + PS417_11115 0.81 -2.3
2,383,404 + PS417_11115 0.90 -0.4
2,383,404 + PS417_11115 0.90 -0.2

Or see this region's nucleotide sequence