Strain Fitness in Pseudomonas simiae WCS417 around PS417_09845

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09835 and PS417_09840 are separated by 202 nucleotidesPS417_09840 and PS417_09845 are separated by 144 nucleotidesPS417_09845 and PS417_09850 are separated by 180 nucleotides PS417_09835: PS417_09835 - hypothetical protein, at 2,131,807 to 2,132,166 _09835 PS417_09840: PS417_09840 - iron ABC transporter substrate-binding protein, at 2,132,369 to 2,132,782 _09840 PS417_09845: PS417_09845 - hypothetical protein, at 2,132,927 to 2,133,793 _09845 PS417_09850: PS417_09850 - hypothetical protein, at 2,133,974 to 2,135,551 _09850 Position (kb) 2132 2133 2134Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2131.949 kb on + strand, within PS417_09835at 2131.949 kb on + strand, within PS417_09835at 2131.949 kb on + strand, within PS417_09835at 2131.953 kb on - strand, within PS417_09835at 2132.075 kb on + strand, within PS417_09835at 2132.103 kb on - strand, within PS417_09835at 2132.166 kb on + strandat 2132.166 kb on + strandat 2132.166 kb on + strandat 2132.167 kb on - strandat 2132.167 kb on - strandat 2132.299 kb on - strandat 2132.327 kb on - strandat 2132.327 kb on - strandat 2132.327 kb on - strandat 2132.375 kb on + strandat 2132.375 kb on + strandat 2132.375 kb on + strandat 2132.376 kb on - strandat 2132.398 kb on - strandat 2132.462 kb on + strand, within PS417_09840at 2132.473 kb on + strand, within PS417_09840at 2132.479 kb on + strand, within PS417_09840at 2132.480 kb on - strand, within PS417_09840at 2132.480 kb on - strandat 2132.480 kb on - strand, within PS417_09840at 2132.485 kb on + strand, within PS417_09840at 2132.485 kb on + strand, within PS417_09840at 2132.486 kb on - strand, within PS417_09840at 2132.597 kb on + strand, within PS417_09840at 2132.597 kb on + strand, within PS417_09840at 2132.598 kb on - strand, within PS417_09840at 2132.703 kb on + strand, within PS417_09840at 2132.704 kb on - strand, within PS417_09840at 2132.704 kb on - strand, within PS417_09840at 2132.704 kb on - strand, within PS417_09840at 2132.721 kb on - strand, within PS417_09840at 2132.721 kb on - strand, within PS417_09840at 2132.737 kb on + strand, within PS417_09840at 2132.737 kb on + strandat 2132.737 kb on + strand, within PS417_09840at 2132.738 kb on - strand, within PS417_09840at 2132.738 kb on - strand, within PS417_09840at 2132.738 kb on - strand, within PS417_09840at 2132.738 kb on - strand, within PS417_09840at 2132.780 kb on + strandat 2132.859 kb on - strandat 2132.859 kb on - strandat 2132.867 kb on + strandat 2132.901 kb on + strandat 2132.901 kb on + strandat 2132.902 kb on - strandat 2132.905 kb on + strandat 2133.178 kb on + strand, within PS417_09845at 2133.178 kb on + strand, within PS417_09845at 2133.178 kb on + strand, within PS417_09845at 2133.179 kb on - strand, within PS417_09845at 2133.196 kb on - strandat 2133.258 kb on + strand, within PS417_09845at 2133.259 kb on - strand, within PS417_09845at 2133.381 kb on + strand, within PS417_09845at 2133.656 kb on - strandat 2133.656 kb on - strand, within PS417_09845at 2133.868 kb on + strandat 2133.900 kb on + strandat 2133.900 kb on + strandat 2133.905 kb on - strandat 2133.905 kb on - strandat 2133.957 kb on + strandat 2133.985 kb on + strandat 2133.985 kb on + strandat 2133.986 kb on - strandat 2133.986 kb on - strandat 2133.986 kb on - strandat 2134.133 kb on + strand, within PS417_09850at 2134.133 kb on + strand, within PS417_09850at 2134.134 kb on - strand, within PS417_09850at 2134.135 kb on + strand, within PS417_09850at 2134.135 kb on + strand, within PS417_09850at 2134.135 kb on + strand, within PS417_09850at 2134.135 kb on + strand, within PS417_09850at 2134.136 kb on - strand, within PS417_09850at 2134.136 kb on - strand, within PS417_09850at 2134.136 kb on - strand, within PS417_09850at 2134.136 kb on - strand, within PS417_09850at 2134.266 kb on + strand, within PS417_09850at 2134.267 kb on - strand, within PS417_09850at 2134.267 kb on - strand, within PS417_09850at 2134.413 kb on - strand, within PS417_09850at 2134.460 kb on + strand, within PS417_09850at 2134.537 kb on - strand, within PS417_09850at 2134.606 kb on + strand, within PS417_09850at 2134.607 kb on - strand, within PS417_09850at 2134.641 kb on + strand, within PS417_09850at 2134.666 kb on + strand, within PS417_09850at 2134.746 kb on - strand, within PS417_09850

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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2,131,949 + PS417_09835 0.39 -0.2
2,131,949 + PS417_09835 0.39 +1.2
2,131,949 + PS417_09835 0.39 -1.3
2,131,953 - PS417_09835 0.41 -2.4
2,132,075 + PS417_09835 0.74 -0.1
2,132,103 - PS417_09835 0.82 +0.4
2,132,166 + -0.3
2,132,166 + -0.5
2,132,166 + +0.2
2,132,167 - +1.6
2,132,167 - -1.8
2,132,299 - -1.2
2,132,327 - -0.5
2,132,327 - +2.4
2,132,327 - -0.5
2,132,375 + -0.1
2,132,375 + -0.3
2,132,375 + -0.6
2,132,376 - -0.1
2,132,398 - -0.9
2,132,462 + PS417_09840 0.22 +0.3
2,132,473 + PS417_09840 0.25 -3.7
2,132,479 + PS417_09840 0.27 +0.7
2,132,480 - PS417_09840 0.27 -0.0
2,132,480 - +0.1
2,132,480 - PS417_09840 0.27 +0.6
2,132,485 + PS417_09840 0.28 -0.4
2,132,485 + PS417_09840 0.28 -0.9
2,132,486 - PS417_09840 0.28 +1.0
2,132,597 + PS417_09840 0.55 -0.7
2,132,597 + PS417_09840 0.55 -0.6
2,132,598 - PS417_09840 0.55 -0.3
2,132,703 + PS417_09840 0.81 +1.9
2,132,704 - PS417_09840 0.81 -1.1
2,132,704 - PS417_09840 0.81 -0.7
2,132,704 - PS417_09840 0.81 +0.4
2,132,721 - PS417_09840 0.85 -0.4
2,132,721 - PS417_09840 0.85 +2.8
2,132,737 + PS417_09840 0.89 -3.1
2,132,737 + -0.7
2,132,737 + PS417_09840 0.89 -0.2
2,132,738 - PS417_09840 0.89 -0.5
2,132,738 - PS417_09840 0.89 +0.7
2,132,738 - PS417_09840 0.89 +2.4
2,132,738 - PS417_09840 0.89 -0.9
2,132,780 + +1.6
2,132,859 - +0.7
2,132,859 - +0.5
2,132,867 + +0.7
2,132,901 + -0.8
2,132,901 + -0.6
2,132,902 - -1.8
2,132,905 + -0.8
2,133,178 + PS417_09845 0.29 -1.0
2,133,178 + PS417_09845 0.29 -0.8
2,133,178 + PS417_09845 0.29 -0.6
2,133,179 - PS417_09845 0.29 -1.6
2,133,196 - +1.0
2,133,258 + PS417_09845 0.38 -0.4
2,133,259 - PS417_09845 0.38 +0.4
2,133,381 + PS417_09845 0.52 +0.1
2,133,656 - -0.5
2,133,656 - PS417_09845 0.84 -0.5
2,133,868 + +1.3
2,133,900 + +1.2
2,133,900 + +0.4
2,133,905 - -0.4
2,133,905 - -0.5
2,133,957 + -2.7
2,133,985 + -0.5
2,133,985 + +3.6
2,133,986 - -0.1
2,133,986 - -0.9
2,133,986 - +3.0
2,134,133 + PS417_09850 0.10 -0.3
2,134,133 + PS417_09850 0.10 +0.4
2,134,134 - PS417_09850 0.10 -3.4
2,134,135 + PS417_09850 0.10 -1.2
2,134,135 + PS417_09850 0.10 -0.1
2,134,135 + PS417_09850 0.10 -1.8
2,134,135 + PS417_09850 0.10 -2.1
2,134,136 - PS417_09850 0.10 +0.1
2,134,136 - PS417_09850 0.10 +0.5
2,134,136 - PS417_09850 0.10 +0.9
2,134,136 - PS417_09850 0.10 -0.7
2,134,266 + PS417_09850 0.19 -0.7
2,134,267 - PS417_09850 0.19 -0.6
2,134,267 - PS417_09850 0.19 -1.3
2,134,413 - PS417_09850 0.28 -0.9
2,134,460 + PS417_09850 0.31 +0.4
2,134,537 - PS417_09850 0.36 -0.6
2,134,606 + PS417_09850 0.40 +0.2
2,134,607 - PS417_09850 0.40 +0.3
2,134,641 + PS417_09850 0.42 +0.0
2,134,666 + PS417_09850 0.44 +1.3
2,134,746 - PS417_09850 0.49 +0.3

Or see this region's nucleotide sequence