Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_09465 and PS417_09470 are separated by 399 nucleotides PS417_09470 and PS417_09475 are separated by 233 nucleotides PS417_09475 and PS417_09480 are separated by 49 nucleotides
PS417_09465: PS417_09465 - FMN reductase, at 2,049,768 to 2,050,331
_09465
PS417_09470: PS417_09470 - hypothetical protein, at 2,050,731 to 2,051,000
_09470
PS417_09475: PS417_09475 - class V aminotransferase, at 2,051,234 to 2,052,394
_09475
PS417_09480: PS417_09480 - peptidase M24, at 2,052,444 to 2,054,252
_09480
Position (kb)
2051
2052
2053 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2050.251 kb on + strand, within PS417_09465 at 2050.539 kb on + strand at 2050.539 kb on + strand at 2050.541 kb on + strand at 2050.542 kb on - strand at 2050.542 kb on - strand at 2050.646 kb on + strand at 2050.686 kb on - strand at 2050.819 kb on - strand, within PS417_09470 at 2050.888 kb on - strand, within PS417_09470 at 2051.119 kb on - strand at 2051.119 kb on - strand at 2051.119 kb on - strand at 2051.122 kb on + strand at 2051.138 kb on + strand at 2051.239 kb on + strand at 2051.239 kb on + strand at 2051.252 kb on + strand at 2051.261 kb on + strand at 2051.603 kb on + strand, within PS417_09475 at 2051.886 kb on - strand, within PS417_09475 at 2052.124 kb on + strand, within PS417_09475 at 2052.124 kb on + strand, within PS417_09475 at 2052.286 kb on + strand at 2052.314 kb on - strand at 2052.314 kb on - strand at 2052.401 kb on + strand at 2052.402 kb on - strand at 2052.413 kb on + strand at 2052.414 kb on - strand at 2052.414 kb on - strand at 2052.416 kb on + strand at 2052.417 kb on - strand at 2052.450 kb on - strand at 2052.568 kb on - strand at 2052.939 kb on + strand, within PS417_09480 at 2052.940 kb on - strand, within PS417_09480
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 2,050,251 + PS417_09465 0.86 -4.0 2,050,539 + -0.6 2,050,539 + +0.6 2,050,541 + +0.8 2,050,542 - -1.5 2,050,542 - -0.4 2,050,646 + +0.8 2,050,686 - -1.3 2,050,819 - PS417_09470 0.33 -3.2 2,050,888 - PS417_09470 0.58 +0.8 2,051,119 - -2.3 2,051,119 - -0.2 2,051,119 - -0.2 2,051,122 + -1.6 2,051,138 + -0.5 2,051,239 + +1.8 2,051,239 + -1.4 2,051,252 + +0.5 2,051,261 + -0.4 2,051,603 + PS417_09475 0.32 -0.4 2,051,886 - PS417_09475 0.56 +0.8 2,052,124 + PS417_09475 0.77 +0.3 2,052,124 + PS417_09475 0.77 +1.4 2,052,286 + -2.1 2,052,314 - +0.2 2,052,314 - +0.5 2,052,401 + -2.3 2,052,402 - +0.1 2,052,413 + -0.1 2,052,414 - -0.3 2,052,414 - +0.4 2,052,416 + -0.2 2,052,417 - +1.7 2,052,450 - +0.4 2,052,568 - +0.6 2,052,939 + PS417_09480 0.27 -1.6 2,052,940 - PS417_09480 0.27 +0.5
Or see this region's nucleotide sequence