Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00080 and PS417_00085 are separated by 21 nucleotides PS417_00085 and PS417_00090 overlap by 4 nucleotides
PS417_00080: PS417_00080 - potassium transporter peripheral membrane component, at 17,327 to 18,700
_00080
PS417_00085: PS417_00085 - 16S rRNA methyltransferase, at 18,722 to 20,032
_00085
PS417_00090: PS417_00090 - methionyl-tRNA formyltransferase, at 20,029 to 20,982
_00090
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 17.767 kb on + strand, within PS417_00080 at 17.767 kb on + strand, within PS417_00080 at 17.768 kb on - strand, within PS417_00080 at 17.768 kb on - strand, within PS417_00080 at 17.768 kb on - strand, within PS417_00080 at 17.768 kb on - strand, within PS417_00080 at 17.768 kb on - strand, within PS417_00080 at 18.007 kb on + strand, within PS417_00080 at 18.009 kb on + strand, within PS417_00080 at 18.009 kb on + strand, within PS417_00080 at 18.010 kb on - strand, within PS417_00080 at 18.010 kb on - strand, within PS417_00080 at 18.222 kb on + strand, within PS417_00080 at 18.309 kb on + strand, within PS417_00080 at 18.309 kb on + strand, within PS417_00080 at 18.440 kb on - strand, within PS417_00080 at 18.440 kb on - strand, within PS417_00080 at 18.440 kb on - strand, within PS417_00080 at 18.557 kb on + strand, within PS417_00080 at 18.557 kb on + strand, within PS417_00080 at 18.557 kb on + strand, within PS417_00080 at 18.557 kb on + strand, within PS417_00080 at 18.558 kb on - strand, within PS417_00080 at 18.558 kb on - strand, within PS417_00080 at 18.763 kb on - strand at 18.924 kb on + strand, within PS417_00085 at 19.777 kb on - strand, within PS417_00085 at 19.777 kb on - strand, within PS417_00085 at 20.997 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 17,767 + PS417_00080 0.32 -1.9 17,767 + PS417_00080 0.32 -0.5 17,768 - PS417_00080 0.32 -0.2 17,768 - PS417_00080 0.32 +2.2 17,768 - PS417_00080 0.32 +1.3 17,768 - PS417_00080 0.32 -0.8 17,768 - PS417_00080 0.32 -0.8 18,007 + PS417_00080 0.49 -2.7 18,009 + PS417_00080 0.50 -3.8 18,009 + PS417_00080 0.50 -0.9 18,010 - PS417_00080 0.50 -0.3 18,010 - PS417_00080 0.50 +0.1 18,222 + PS417_00080 0.65 -1.9 18,309 + PS417_00080 0.71 -1.7 18,309 + PS417_00080 0.71 -2.8 18,440 - PS417_00080 0.81 -0.8 18,440 - PS417_00080 0.81 +1.3 18,440 - PS417_00080 0.81 +0.1 18,557 + PS417_00080 0.90 +0.2 18,557 + PS417_00080 0.90 +0.4 18,557 + PS417_00080 0.90 -2.1 18,557 + PS417_00080 0.90 -0.1 18,558 - PS417_00080 0.90 -0.5 18,558 - PS417_00080 0.90 -2.9 18,763 - -0.4 18,924 + PS417_00085 0.15 -0.2 19,777 - PS417_00085 0.80 -1.6 19,777 - PS417_00085 0.80 -2.7 20,997 - -0.3
Or see this region's nucleotide sequence