Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_07315 and PS417_07325 are separated by 318 nucleotides PS417_07325 and PS417_07330 are separated by 180 nucleotides
PS417_07315: PS417_07315 - LysR family transcriptional regulator, at 1,613,236 to 1,614,141
_07315
PS417_07325: PS417_07325 - AraC family transcriptional regulator, at 1,614,460 to 1,615,338
_07325
PS417_07330: PS417_07330 - 4-hydroxybenzoate 3-monooxygenase, at 1,615,519 to 1,616,712
_07330
Position (kb)
1614
1615
1616 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1613.533 kb on - strand, within PS417_07315 at 1613.625 kb on + strand, within PS417_07315 at 1613.816 kb on - strand, within PS417_07315 at 1613.884 kb on - strand, within PS417_07315 at 1613.957 kb on - strand, within PS417_07315 at 1613.972 kb on - strand, within PS417_07315 at 1613.972 kb on - strand, within PS417_07315 at 1614.034 kb on + strand, within PS417_07315 at 1614.034 kb on + strand, within PS417_07315 at 1614.140 kb on - strand at 1614.149 kb on + strand at 1614.150 kb on - strand at 1614.197 kb on + strand at 1614.197 kb on + strand at 1614.198 kb on - strand at 1614.204 kb on + strand at 1614.248 kb on + strand at 1614.248 kb on + strand at 1614.249 kb on - strand at 1614.261 kb on + strand at 1614.262 kb on - strand at 1614.304 kb on - strand at 1614.431 kb on - strand at 1614.461 kb on + strand at 1614.462 kb on - strand at 1614.462 kb on - strand at 1614.602 kb on + strand, within PS417_07325 at 1614.602 kb on + strand, within PS417_07325 at 1614.602 kb on + strand, within PS417_07325 at 1614.603 kb on - strand, within PS417_07325 at 1614.775 kb on - strand, within PS417_07325 at 1614.788 kb on + strand, within PS417_07325 at 1614.957 kb on + strand at 1614.958 kb on - strand, within PS417_07325 at 1615.051 kb on + strand, within PS417_07325 at 1615.052 kb on - strand, within PS417_07325 at 1615.052 kb on - strand, within PS417_07325 at 1615.052 kb on - strand, within PS417_07325 at 1615.052 kb on - strand, within PS417_07325 at 1615.056 kb on - strand, within PS417_07325 at 1615.056 kb on - strand, within PS417_07325 at 1615.090 kb on + strand, within PS417_07325 at 1615.091 kb on - strand, within PS417_07325 at 1615.091 kb on - strand, within PS417_07325 at 1615.181 kb on + strand, within PS417_07325 at 1615.232 kb on + strand, within PS417_07325 at 1615.424 kb on + strand at 1615.424 kb on + strand at 1615.424 kb on + strand at 1615.517 kb on + strand at 1615.619 kb on + strand at 1615.639 kb on + strand, within PS417_07330 at 1615.639 kb on + strand, within PS417_07330 at 1615.825 kb on + strand, within PS417_07330 at 1615.826 kb on - strand, within PS417_07330 at 1615.891 kb on + strand, within PS417_07330 at 1615.891 kb on + strand, within PS417_07330 at 1615.892 kb on - strand, within PS417_07330 at 1615.987 kb on + strand, within PS417_07330 at 1615.987 kb on + strand, within PS417_07330 at 1615.987 kb on + strand, within PS417_07330 at 1615.987 kb on + strand, within PS417_07330 at 1615.987 kb on + strand, within PS417_07330 at 1615.987 kb on + strand, within PS417_07330 at 1615.987 kb on + strand, within PS417_07330 at 1615.988 kb on - strand, within PS417_07330 at 1616.128 kb on + strand, within PS417_07330 at 1616.129 kb on - strand, within PS417_07330 at 1616.188 kb on + strand, within PS417_07330 at 1616.188 kb on + strand, within PS417_07330 at 1616.192 kb on - strand, within PS417_07330
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,613,533 - PS417_07315 0.33 -1.4 1,613,625 + PS417_07315 0.43 +0.4 1,613,816 - PS417_07315 0.64 +0.5 1,613,884 - PS417_07315 0.72 +0.0 1,613,957 - PS417_07315 0.80 -1.2 1,613,972 - PS417_07315 0.81 -0.4 1,613,972 - PS417_07315 0.81 +1.3 1,614,034 + PS417_07315 0.88 +0.8 1,614,034 + PS417_07315 0.88 -2.2 1,614,140 - +0.8 1,614,149 + -1.9 1,614,150 - +0.2 1,614,197 + -0.4 1,614,197 + +2.6 1,614,198 - +0.1 1,614,204 + -1.4 1,614,248 + -0.2 1,614,248 + +0.6 1,614,249 - -2.2 1,614,261 + -1.5 1,614,262 - -1.0 1,614,304 - -0.7 1,614,431 - -1.8 1,614,461 + +0.7 1,614,462 - -1.3 1,614,462 - -3.4 1,614,602 + PS417_07325 0.16 +0.4 1,614,602 + PS417_07325 0.16 -0.9 1,614,602 + PS417_07325 0.16 -0.1 1,614,603 - PS417_07325 0.16 -2.5 1,614,775 - PS417_07325 0.36 -0.2 1,614,788 + PS417_07325 0.37 +2.7 1,614,957 + +2.9 1,614,958 - PS417_07325 0.57 -0.0 1,615,051 + PS417_07325 0.67 -0.1 1,615,052 - PS417_07325 0.67 +0.7 1,615,052 - PS417_07325 0.67 -1.1 1,615,052 - PS417_07325 0.67 +0.2 1,615,052 - PS417_07325 0.67 +0.5 1,615,056 - PS417_07325 0.68 -0.6 1,615,056 - PS417_07325 0.68 +0.5 1,615,090 + PS417_07325 0.72 -0.9 1,615,091 - PS417_07325 0.72 -1.3 1,615,091 - PS417_07325 0.72 -0.4 1,615,181 + PS417_07325 0.82 -0.6 1,615,232 + PS417_07325 0.88 +0.2 1,615,424 + -0.4 1,615,424 + +2.2 1,615,424 + +0.9 1,615,517 + -0.3 1,615,619 + -0.0 1,615,639 + PS417_07330 0.10 +0.8 1,615,639 + PS417_07330 0.10 +0.8 1,615,825 + PS417_07330 0.26 -0.2 1,615,826 - PS417_07330 0.26 -0.0 1,615,891 + PS417_07330 0.31 +0.2 1,615,891 + PS417_07330 0.31 -0.3 1,615,892 - PS417_07330 0.31 +0.2 1,615,987 + PS417_07330 0.39 -0.2 1,615,987 + PS417_07330 0.39 -0.6 1,615,987 + PS417_07330 0.39 +0.4 1,615,987 + PS417_07330 0.39 -0.8 1,615,987 + PS417_07330 0.39 +0.5 1,615,987 + PS417_07330 0.39 +2.1 1,615,987 + PS417_07330 0.39 +2.3 1,615,988 - PS417_07330 0.39 -1.1 1,616,128 + PS417_07330 0.51 +1.0 1,616,129 - PS417_07330 0.51 +0.3 1,616,188 + PS417_07330 0.56 +0.3 1,616,188 + PS417_07330 0.56 +0.0 1,616,192 - PS417_07330 0.56 +0.8
Or see this region's nucleotide sequence