Strain Fitness in Pseudomonas simiae WCS417 around PS417_07325

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07315 and PS417_07325 are separated by 318 nucleotidesPS417_07325 and PS417_07330 are separated by 180 nucleotides PS417_07315: PS417_07315 - LysR family transcriptional regulator, at 1,613,236 to 1,614,141 _07315 PS417_07325: PS417_07325 - AraC family transcriptional regulator, at 1,614,460 to 1,615,338 _07325 PS417_07330: PS417_07330 - 4-hydroxybenzoate 3-monooxygenase, at 1,615,519 to 1,616,712 _07330 Position (kb) 1614 1615 1616Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1613.533 kb on - strand, within PS417_07315at 1613.625 kb on + strand, within PS417_07315at 1613.816 kb on - strand, within PS417_07315at 1613.884 kb on - strand, within PS417_07315at 1613.957 kb on - strand, within PS417_07315at 1613.972 kb on - strand, within PS417_07315at 1613.972 kb on - strand, within PS417_07315at 1614.034 kb on + strand, within PS417_07315at 1614.034 kb on + strand, within PS417_07315at 1614.140 kb on - strandat 1614.149 kb on + strandat 1614.150 kb on - strandat 1614.197 kb on + strandat 1614.197 kb on + strandat 1614.198 kb on - strandat 1614.204 kb on + strandat 1614.248 kb on + strandat 1614.248 kb on + strandat 1614.249 kb on - strandat 1614.261 kb on + strandat 1614.262 kb on - strandat 1614.304 kb on - strandat 1614.431 kb on - strandat 1614.461 kb on + strandat 1614.462 kb on - strandat 1614.462 kb on - strandat 1614.602 kb on + strand, within PS417_07325at 1614.602 kb on + strand, within PS417_07325at 1614.602 kb on + strand, within PS417_07325at 1614.603 kb on - strand, within PS417_07325at 1614.775 kb on - strand, within PS417_07325at 1614.788 kb on + strand, within PS417_07325at 1614.957 kb on + strandat 1614.958 kb on - strand, within PS417_07325at 1615.051 kb on + strand, within PS417_07325at 1615.052 kb on - strand, within PS417_07325at 1615.052 kb on - strand, within PS417_07325at 1615.052 kb on - strand, within PS417_07325at 1615.052 kb on - strand, within PS417_07325at 1615.056 kb on - strand, within PS417_07325at 1615.056 kb on - strand, within PS417_07325at 1615.090 kb on + strand, within PS417_07325at 1615.091 kb on - strand, within PS417_07325at 1615.091 kb on - strand, within PS417_07325at 1615.181 kb on + strand, within PS417_07325at 1615.232 kb on + strand, within PS417_07325at 1615.424 kb on + strandat 1615.424 kb on + strandat 1615.424 kb on + strandat 1615.517 kb on + strandat 1615.619 kb on + strandat 1615.639 kb on + strand, within PS417_07330at 1615.639 kb on + strand, within PS417_07330at 1615.825 kb on + strand, within PS417_07330at 1615.826 kb on - strand, within PS417_07330at 1615.891 kb on + strand, within PS417_07330at 1615.891 kb on + strand, within PS417_07330at 1615.892 kb on - strand, within PS417_07330at 1615.987 kb on + strand, within PS417_07330at 1615.987 kb on + strand, within PS417_07330at 1615.987 kb on + strand, within PS417_07330at 1615.987 kb on + strand, within PS417_07330at 1615.987 kb on + strand, within PS417_07330at 1615.987 kb on + strand, within PS417_07330at 1615.987 kb on + strand, within PS417_07330at 1615.988 kb on - strand, within PS417_07330at 1616.128 kb on + strand, within PS417_07330at 1616.129 kb on - strand, within PS417_07330at 1616.188 kb on + strand, within PS417_07330at 1616.188 kb on + strand, within PS417_07330at 1616.192 kb on - strand, within PS417_07330

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,613,533 - PS417_07315 0.33 -1.4
1,613,625 + PS417_07315 0.43 +0.4
1,613,816 - PS417_07315 0.64 +0.5
1,613,884 - PS417_07315 0.72 +0.0
1,613,957 - PS417_07315 0.80 -1.2
1,613,972 - PS417_07315 0.81 -0.4
1,613,972 - PS417_07315 0.81 +1.3
1,614,034 + PS417_07315 0.88 +0.8
1,614,034 + PS417_07315 0.88 -2.2
1,614,140 - +0.8
1,614,149 + -1.9
1,614,150 - +0.2
1,614,197 + -0.4
1,614,197 + +2.6
1,614,198 - +0.1
1,614,204 + -1.4
1,614,248 + -0.2
1,614,248 + +0.6
1,614,249 - -2.2
1,614,261 + -1.5
1,614,262 - -1.0
1,614,304 - -0.7
1,614,431 - -1.8
1,614,461 + +0.7
1,614,462 - -1.3
1,614,462 - -3.4
1,614,602 + PS417_07325 0.16 +0.4
1,614,602 + PS417_07325 0.16 -0.9
1,614,602 + PS417_07325 0.16 -0.1
1,614,603 - PS417_07325 0.16 -2.5
1,614,775 - PS417_07325 0.36 -0.2
1,614,788 + PS417_07325 0.37 +2.7
1,614,957 + +2.9
1,614,958 - PS417_07325 0.57 -0.0
1,615,051 + PS417_07325 0.67 -0.1
1,615,052 - PS417_07325 0.67 +0.7
1,615,052 - PS417_07325 0.67 -1.1
1,615,052 - PS417_07325 0.67 +0.2
1,615,052 - PS417_07325 0.67 +0.5
1,615,056 - PS417_07325 0.68 -0.6
1,615,056 - PS417_07325 0.68 +0.5
1,615,090 + PS417_07325 0.72 -0.9
1,615,091 - PS417_07325 0.72 -1.3
1,615,091 - PS417_07325 0.72 -0.4
1,615,181 + PS417_07325 0.82 -0.6
1,615,232 + PS417_07325 0.88 +0.2
1,615,424 + -0.4
1,615,424 + +2.2
1,615,424 + +0.9
1,615,517 + -0.3
1,615,619 + -0.0
1,615,639 + PS417_07330 0.10 +0.8
1,615,639 + PS417_07330 0.10 +0.8
1,615,825 + PS417_07330 0.26 -0.2
1,615,826 - PS417_07330 0.26 -0.0
1,615,891 + PS417_07330 0.31 +0.2
1,615,891 + PS417_07330 0.31 -0.3
1,615,892 - PS417_07330 0.31 +0.2
1,615,987 + PS417_07330 0.39 -0.2
1,615,987 + PS417_07330 0.39 -0.6
1,615,987 + PS417_07330 0.39 +0.4
1,615,987 + PS417_07330 0.39 -0.8
1,615,987 + PS417_07330 0.39 +0.5
1,615,987 + PS417_07330 0.39 +2.1
1,615,987 + PS417_07330 0.39 +2.3
1,615,988 - PS417_07330 0.39 -1.1
1,616,128 + PS417_07330 0.51 +1.0
1,616,129 - PS417_07330 0.51 +0.3
1,616,188 + PS417_07330 0.56 +0.3
1,616,188 + PS417_07330 0.56 +0.0
1,616,192 - PS417_07330 0.56 +0.8

Or see this region's nucleotide sequence