Strain Fitness in Pseudomonas simiae WCS417 around PS417_06525

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06515 and PS417_06525 are separated by 80 nucleotidesPS417_06525 and PS417_06530 are separated by 143 nucleotides PS417_06515: PS417_06515 - beta-agarase, at 1,443,538 to 1,445,835 _06515 PS417_06525: PS417_06525 - beta-lactamase, at 1,445,916 to 1,447,061 _06525 PS417_06530: PS417_06530 - membrane protein, at 1,447,205 to 1,448,347 _06530 Position (kb) 1445 1446 1447 1448Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1445.056 kb on + strand, within PS417_06515at 1445.057 kb on - strand, within PS417_06515at 1445.185 kb on + strand, within PS417_06515at 1445.212 kb on + strand, within PS417_06515at 1445.264 kb on + strand, within PS417_06515at 1445.265 kb on - strand, within PS417_06515at 1445.268 kb on - strand, within PS417_06515at 1445.321 kb on - strand, within PS417_06515at 1445.343 kb on + strand, within PS417_06515at 1445.343 kb on + strand, within PS417_06515at 1445.344 kb on - strand, within PS417_06515at 1445.344 kb on - strand, within PS417_06515at 1445.347 kb on + strand, within PS417_06515at 1445.347 kb on + strand, within PS417_06515at 1445.347 kb on + strand, within PS417_06515at 1445.348 kb on - strand, within PS417_06515at 1445.348 kb on - strand, within PS417_06515at 1445.348 kb on - strandat 1445.348 kb on - strand, within PS417_06515at 1445.348 kb on - strand, within PS417_06515at 1445.935 kb on - strandat 1445.957 kb on - strandat 1446.198 kb on + strand, within PS417_06525at 1446.199 kb on - strand, within PS417_06525at 1446.199 kb on - strand, within PS417_06525at 1446.536 kb on + strand, within PS417_06525at 1446.536 kb on + strand, within PS417_06525at 1446.536 kb on + strand, within PS417_06525at 1446.537 kb on - strand, within PS417_06525at 1446.537 kb on - strand, within PS417_06525at 1446.537 kb on - strand, within PS417_06525at 1446.539 kb on - strand, within PS417_06525at 1446.584 kb on - strand, within PS417_06525at 1446.593 kb on - strand, within PS417_06525at 1446.593 kb on - strand, within PS417_06525at 1446.663 kb on - strand, within PS417_06525at 1446.665 kb on + strand, within PS417_06525at 1446.666 kb on - strand, within PS417_06525at 1446.738 kb on + strand, within PS417_06525at 1446.738 kb on + strand, within PS417_06525at 1446.758 kb on + strandat 1446.758 kb on + strand, within PS417_06525at 1446.758 kb on + strand, within PS417_06525at 1446.968 kb on - strandat 1446.968 kb on - strandat 1446.990 kb on - strandat 1447.002 kb on + strandat 1447.002 kb on + strandat 1447.006 kb on + strandat 1447.006 kb on + strandat 1447.006 kb on + strandat 1447.007 kb on - strandat 1447.011 kb on - strandat 1447.011 kb on - strandat 1447.102 kb on - strandat 1447.103 kb on + strandat 1447.103 kb on + strandat 1447.199 kb on + strandat 1447.236 kb on + strandat 1447.246 kb on + strandat 1447.392 kb on + strand, within PS417_06530at 1447.685 kb on + strand, within PS417_06530at 1447.781 kb on + strand, within PS417_06530at 1447.781 kb on + strand, within PS417_06530

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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1,445,056 + PS417_06515 0.66 -0.8
1,445,057 - PS417_06515 0.66 -2.2
1,445,185 + PS417_06515 0.72 +0.1
1,445,212 + PS417_06515 0.73 -0.5
1,445,264 + PS417_06515 0.75 -0.6
1,445,265 - PS417_06515 0.75 +0.4
1,445,268 - PS417_06515 0.75 -3.0
1,445,321 - PS417_06515 0.78 -1.6
1,445,343 + PS417_06515 0.79 +1.3
1,445,343 + PS417_06515 0.79 -0.0
1,445,344 - PS417_06515 0.79 +0.7
1,445,344 - PS417_06515 0.79 -0.1
1,445,347 + PS417_06515 0.79 +0.6
1,445,347 + PS417_06515 0.79 -0.2
1,445,347 + PS417_06515 0.79 +3.2
1,445,348 - PS417_06515 0.79 -0.4
1,445,348 - PS417_06515 0.79 +0.7
1,445,348 - +2.7
1,445,348 - PS417_06515 0.79 +1.4
1,445,348 - PS417_06515 0.79 -0.6
1,445,935 - +0.3
1,445,957 - -0.8
1,446,198 + PS417_06525 0.25 +0.6
1,446,199 - PS417_06525 0.25 -3.2
1,446,199 - PS417_06525 0.25 +0.7
1,446,536 + PS417_06525 0.54 +1.0
1,446,536 + PS417_06525 0.54 +0.6
1,446,536 + PS417_06525 0.54 +1.1
1,446,537 - PS417_06525 0.54 -0.0
1,446,537 - PS417_06525 0.54 -0.1
1,446,537 - PS417_06525 0.54 -0.5
1,446,539 - PS417_06525 0.54 -1.1
1,446,584 - PS417_06525 0.58 +0.4
1,446,593 - PS417_06525 0.59 +0.5
1,446,593 - PS417_06525 0.59 -0.1
1,446,663 - PS417_06525 0.65 +1.4
1,446,665 + PS417_06525 0.65 -0.5
1,446,666 - PS417_06525 0.65 -3.1
1,446,738 + PS417_06525 0.72 -1.3
1,446,738 + PS417_06525 0.72 -0.3
1,446,758 + +1.5
1,446,758 + PS417_06525 0.73 +0.2
1,446,758 + PS417_06525 0.73 -0.1
1,446,968 - +1.4
1,446,968 - -0.7
1,446,990 - +0.1
1,447,002 + -0.5
1,447,002 + -1.2
1,447,006 + -0.5
1,447,006 + -2.0
1,447,006 + +1.7
1,447,007 - -0.3
1,447,011 - +0.5
1,447,011 - -1.7
1,447,102 - -1.4
1,447,103 + -0.7
1,447,103 + -1.4
1,447,199 + -0.9
1,447,236 + -2.7
1,447,246 + -1.6
1,447,392 + PS417_06530 0.16 -2.9
1,447,685 + PS417_06530 0.42 -0.2
1,447,781 + PS417_06530 0.50 -2.4
1,447,781 + PS417_06530 0.50 -2.7

Or see this region's nucleotide sequence