Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00630 and PS417_00635 are separated by 1 nucleotides PS417_00635 and PS417_00640 are separated by 11 nucleotides PS417_00640 and PS417_00645 are separated by 99 nucleotides PS417_00645 and PS417_00650 are separated by 52 nucleotides
PS417_00630: PS417_00630 - nitrate ABC transporter substrate-binding protein, at 129,155 to 130,180
_00630
PS417_00635: PS417_00635 - sulfonate ABC transporter ATP-binding protein, at 130,182 to 131,033
_00635
PS417_00640: PS417_00640 - ABC transporter permease, at 131,045 to 131,893
_00640
PS417_00645: PS417_00645 - hypothetical protein, at 131,993 to 132,619
_00645
PS417_00650: PS417_00650 - LysR family transcriptional regulator, at 132,672 to 133,592
_00650
Position (kb) 131
132 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 130.142 kb on + strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.398 kb on - strand, within PS417_00635 at 130.545 kb on - strand, within PS417_00635 at 130.587 kb on + strand, within PS417_00635 at 130.905 kb on + strand, within PS417_00635 at 130.905 kb on + strand, within PS417_00635 at 131.028 kb on + strand at 131.029 kb on - strand at 131.058 kb on - strand at 131.058 kb on - strand at 131.070 kb on + strand at 131.071 kb on - strand at 131.071 kb on - strand at 131.206 kb on + strand, within PS417_00640 at 131.321 kb on + strand, within PS417_00640 at 131.321 kb on + strand, within PS417_00640 at 131.585 kb on + strand, within PS417_00640 at 131.585 kb on + strand, within PS417_00640 at 131.747 kb on + strand, within PS417_00640 at 131.747 kb on + strand, within PS417_00640 at 131.748 kb on - strand, within PS417_00640 at 131.748 kb on - strand, within PS417_00640 at 131.748 kb on - strand, within PS417_00640 at 131.774 kb on + strand, within PS417_00640 at 131.774 kb on + strand, within PS417_00640 at 131.775 kb on - strand, within PS417_00640 at 131.775 kb on - strand, within PS417_00640 at 131.775 kb on - strand, within PS417_00640 at 131.987 kb on - strand at 132.024 kb on + strand at 132.024 kb on + strand at 132.136 kb on + strand, within PS417_00645 at 132.136 kb on + strand, within PS417_00645 at 132.152 kb on - strand, within PS417_00645 at 132.290 kb on - strand, within PS417_00645 at 132.353 kb on + strand, within PS417_00645 at 132.353 kb on + strand, within PS417_00645 at 132.353 kb on + strand, within PS417_00645 at 132.354 kb on - strand, within PS417_00645 at 132.482 kb on - strand, within PS417_00645 at 132.550 kb on + strand, within PS417_00645 at 132.550 kb on + strand, within PS417_00645 at 132.579 kb on - strand at 132.588 kb on - strand at 132.618 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 130,142 + +0.1 130,143 - -0.4 130,143 - -0.1 130,143 - -1.3 130,143 - +0.2 130,143 - +0.0 130,398 - PS417_00635 0.25 -0.5 130,545 - PS417_00635 0.43 -0.5 130,587 + PS417_00635 0.48 -0.3 130,905 + PS417_00635 0.85 +0.2 130,905 + PS417_00635 0.85 +0.2 131,028 + +0.5 131,029 - +2.1 131,058 - +1.0 131,058 - -0.4 131,070 + -0.6 131,071 - +0.2 131,071 - -2.8 131,206 + PS417_00640 0.19 +0.1 131,321 + PS417_00640 0.33 +1.8 131,321 + PS417_00640 0.33 -0.1 131,585 + PS417_00640 0.64 -0.2 131,585 + PS417_00640 0.64 +0.8 131,747 + PS417_00640 0.83 +0.7 131,747 + PS417_00640 0.83 -0.6 131,748 - PS417_00640 0.83 +2.3 131,748 - PS417_00640 0.83 +0.1 131,748 - PS417_00640 0.83 +0.3 131,774 + PS417_00640 0.86 +1.0 131,774 + PS417_00640 0.86 +0.1 131,775 - PS417_00640 0.86 -2.4 131,775 - PS417_00640 0.86 +0.9 131,775 - PS417_00640 0.86 +0.4 131,987 - -0.1 132,024 + +0.3 132,024 + -0.4 132,136 + PS417_00645 0.23 +0.3 132,136 + PS417_00645 0.23 -0.6 132,152 - PS417_00645 0.25 +1.1 132,290 - PS417_00645 0.47 -1.0 132,353 + PS417_00645 0.57 -1.6 132,353 + PS417_00645 0.57 +1.3 132,353 + PS417_00645 0.57 -0.9 132,354 - PS417_00645 0.58 +2.0 132,482 - PS417_00645 0.78 -1.9 132,550 + PS417_00645 0.89 -2.8 132,550 + PS417_00645 0.89 +0.3 132,579 - +0.0 132,588 - +0.8 132,618 - +1.8
Or see this region's nucleotide sequence