Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_06045 and PS417_06050 are separated by 55 nucleotides PS417_06050 and PS417_06055 are separated by 270 nucleotides PS417_06055 and PS417_06060 are separated by 185 nucleotides
PS417_06045: PS417_06045 - membrane protein, at 1,341,557 to 1,342,342
_06045
PS417_06050: PS417_06050 - chromosome partitioning protein ParA, at 1,342,398 to 1,342,823
_06050
PS417_06055: PS417_06055 - pilin assembly protein, at 1,343,094 to 1,343,438
_06055
PS417_06060: PS417_06060 - phosphoenolpyruvate carboxylase, at 1,343,624 to 1,346,251
_06060
Position (kb)
1343
1344 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1342.105 kb on - strand, within PS417_06045 at 1342.336 kb on + strand at 1342.399 kb on + strand at 1342.828 kb on + strand at 1343.073 kb on + strand at 1343.186 kb on - strand, within PS417_06055 at 1343.236 kb on + strand, within PS417_06055 at 1343.236 kb on + strand, within PS417_06055 at 1343.237 kb on - strand, within PS417_06055 at 1343.315 kb on - strand, within PS417_06055 at 1343.315 kb on - strand, within PS417_06055 at 1343.315 kb on - strand, within PS417_06055 at 1343.372 kb on - strand, within PS417_06055 at 1343.501 kb on - strand at 1343.514 kb on + strand at 1343.515 kb on - strand at 1343.546 kb on + strand at 1343.877 kb on - strand at 1343.877 kb on - strand at 1344.072 kb on - strand, within PS417_06060 at 1344.278 kb on + strand, within PS417_06060 at 1344.279 kb on - strand, within PS417_06060 at 1344.423 kb on + strand, within PS417_06060
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,342,105 - PS417_06045 0.70 -0.4 1,342,336 + -0.3 1,342,399 + -0.2 1,342,828 + -2.6 1,343,073 + -0.6 1,343,186 - PS417_06055 0.27 -2.9 1,343,236 + PS417_06055 0.41 +3.6 1,343,236 + PS417_06055 0.41 +0.2 1,343,237 - PS417_06055 0.41 -0.3 1,343,315 - PS417_06055 0.64 -3.3 1,343,315 - PS417_06055 0.64 +0.4 1,343,315 - PS417_06055 0.64 +1.4 1,343,372 - PS417_06055 0.81 +0.9 1,343,501 - +0.6 1,343,514 + -0.6 1,343,515 - -0.6 1,343,546 + -0.8 1,343,877 - -1.2 1,343,877 - +0.3 1,344,072 - PS417_06060 0.17 +1.8 1,344,278 + PS417_06060 0.25 -0.9 1,344,279 - PS417_06060 0.25 -1.1 1,344,423 + PS417_06060 0.30 -0.4
Or see this region's nucleotide sequence