Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_05405 and PS417_05410 are separated by 96 nucleotides PS417_05410 and PS417_05415 are separated by 324 nucleotides
PS417_05405: PS417_05405 - L-alanine and D-alanine permease (from data) , at 1,211,485 to 1,212,903
_05405
PS417_05410: PS417_05410 - membrane protein, at 1,213,000 to 1,214,148
_05410
PS417_05415: PS417_05415 - glutamate synthase, at 1,214,473 to 1,216,092
_05415
Position (kb)
1212
1213
1214
1215 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1212.211 kb on - strand, within PS417_05405 at 1212.256 kb on + strand, within PS417_05405 at 1212.257 kb on - strand, within PS417_05405 at 1212.445 kb on + strand, within PS417_05405 at 1212.805 kb on + strand at 1212.805 kb on + strand at 1212.806 kb on - strand at 1212.806 kb on - strand at 1212.806 kb on - strand at 1212.806 kb on - strand at 1212.847 kb on + strand at 1212.847 kb on + strand at 1212.848 kb on - strand at 1213.025 kb on - strand at 1213.051 kb on - strand at 1213.051 kb on - strand at 1213.292 kb on + strand, within PS417_05410 at 1213.353 kb on - strand, within PS417_05410 at 1213.628 kb on + strand at 1213.628 kb on + strand, within PS417_05410 at 1213.891 kb on - strand, within PS417_05410 at 1213.891 kb on - strand, within PS417_05410 at 1213.902 kb on - strand, within PS417_05410 at 1214.165 kb on - strand at 1214.175 kb on + strand at 1214.207 kb on - strand at 1214.250 kb on - strand at 1214.250 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 1,212,211 - PS417_05405 0.51 -2.6 1,212,256 + PS417_05405 0.54 +0.3 1,212,257 - PS417_05405 0.54 -0.8 1,212,445 + PS417_05405 0.68 +3.8 1,212,805 + -0.3 1,212,805 + +0.4 1,212,806 - -1.6 1,212,806 - -2.4 1,212,806 - -1.0 1,212,806 - +0.5 1,212,847 + +0.8 1,212,847 + -0.0 1,212,848 - -0.5 1,213,025 - -0.6 1,213,051 - +0.1 1,213,051 - -1.4 1,213,292 + PS417_05410 0.25 -1.5 1,213,353 - PS417_05410 0.31 -0.1 1,213,628 + -0.4 1,213,628 + PS417_05410 0.55 +1.2 1,213,891 - PS417_05410 0.78 +0.1 1,213,891 - PS417_05410 0.78 +3.3 1,213,902 - PS417_05410 0.79 -1.5 1,214,165 - +0.3 1,214,175 + +1.3 1,214,207 - -0.7 1,214,250 - -0.7 1,214,250 - -1.4
Or see this region's nucleotide sequence