Strain Fitness in Pseudomonas simiae WCS417 around PS417_04905

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04900 and PS417_04905 are separated by 72 nucleotidesPS417_04905 and PS417_04910 are separated by 10 nucleotides PS417_04900: PS417_04900 - amino acid ABC transporter substrate-binding protein, at 1,091,773 to 1,092,804 _04900 PS417_04905: PS417_04905 - amino acid ABC transporter permease, at 1,092,877 to 1,094,058 _04905 PS417_04910: PS417_04910 - amino acid ABC transporter permease, at 1,094,069 to 1,095,166 _04910 Position (kb) 1092 1093 1094 1095Strain fitness (log2 ratio) -2 -1 0 1at 1092.149 kb on - strand, within PS417_04900at 1092.149 kb on - strand, within PS417_04900at 1092.151 kb on + strand, within PS417_04900at 1092.151 kb on + strand, within PS417_04900at 1092.241 kb on - strand, within PS417_04900at 1092.292 kb on + strand, within PS417_04900at 1092.293 kb on - strand, within PS417_04900at 1092.293 kb on - strand, within PS417_04900at 1092.293 kb on - strand, within PS417_04900at 1092.421 kb on + strand, within PS417_04900at 1092.422 kb on - strand, within PS417_04900at 1092.518 kb on - strand, within PS417_04900at 1092.666 kb on - strand, within PS417_04900at 1092.666 kb on - strand, within PS417_04900at 1092.691 kb on + strand, within PS417_04900at 1092.692 kb on - strand, within PS417_04900at 1092.692 kb on - strand, within PS417_04900at 1092.784 kb on + strandat 1092.785 kb on - strandat 1093.033 kb on - strand, within PS417_04905at 1093.115 kb on - strand, within PS417_04905at 1093.209 kb on - strand, within PS417_04905at 1093.255 kb on + strand, within PS417_04905at 1093.255 kb on + strand, within PS417_04905at 1093.256 kb on - strand, within PS417_04905at 1093.256 kb on - strandat 1093.687 kb on + strand, within PS417_04905at 1094.027 kb on - strandat 1094.027 kb on - strandat 1094.080 kb on + strandat 1094.081 kb on - strandat 1094.201 kb on + strand, within PS417_04910at 1094.330 kb on + strand, within PS417_04910at 1094.330 kb on + strand, within PS417_04910at 1094.331 kb on - strand, within PS417_04910at 1094.331 kb on - strand, within PS417_04910at 1094.411 kb on - strand, within PS417_04910at 1094.798 kb on + strand, within PS417_04910at 1094.798 kb on + strand, within PS417_04910at 1094.799 kb on - strand, within PS417_04910

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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1,092,149 - PS417_04900 0.36 -0.5
1,092,149 - PS417_04900 0.36 -1.4
1,092,151 + PS417_04900 0.37 +0.2
1,092,151 + PS417_04900 0.37 -0.1
1,092,241 - PS417_04900 0.45 +0.7
1,092,292 + PS417_04900 0.50 +0.2
1,092,293 - PS417_04900 0.50 -0.5
1,092,293 - PS417_04900 0.50 +0.4
1,092,293 - PS417_04900 0.50 -1.0
1,092,421 + PS417_04900 0.63 -0.2
1,092,422 - PS417_04900 0.63 -1.2
1,092,518 - PS417_04900 0.72 -0.1
1,092,666 - PS417_04900 0.87 -0.4
1,092,666 - PS417_04900 0.87 +0.8
1,092,691 + PS417_04900 0.89 -0.7
1,092,692 - PS417_04900 0.89 -0.7
1,092,692 - PS417_04900 0.89 -0.5
1,092,784 + +0.6
1,092,785 - +0.7
1,093,033 - PS417_04905 0.13 -0.9
1,093,115 - PS417_04905 0.20 -0.7
1,093,209 - PS417_04905 0.28 -0.5
1,093,255 + PS417_04905 0.32 -1.1
1,093,255 + PS417_04905 0.32 -0.3
1,093,256 - PS417_04905 0.32 -1.1
1,093,256 - +0.7
1,093,687 + PS417_04905 0.69 -1.2
1,094,027 - -0.4
1,094,027 - -1.1
1,094,080 + +0.3
1,094,081 - -1.0
1,094,201 + PS417_04910 0.12 -0.6
1,094,330 + PS417_04910 0.24 -0.5
1,094,330 + PS417_04910 0.24 -0.4
1,094,331 - PS417_04910 0.24 -1.1
1,094,331 - PS417_04910 0.24 -1.6
1,094,411 - PS417_04910 0.31 -1.9
1,094,798 + PS417_04910 0.66 +0.2
1,094,798 + PS417_04910 0.66 -1.0
1,094,799 - PS417_04910 0.66 -0.7

Or see this region's nucleotide sequence