Strain Fitness in Pseudomonas simiae WCS417 around PS417_00455

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00450 and PS417_00455 are separated by 376 nucleotidesPS417_00455 and PS417_00460 are separated by 79 nucleotidesPS417_00460 and PS417_00465 are separated by 2 nucleotides PS417_00450: PS417_00450 - chemotaxis protein CheY, at 89,226 to 90,572 _00450 PS417_00455: PS417_00455 - hypothetical protein, at 90,949 to 91,233 _00455 PS417_00460: PS417_00460 - membrane protein, at 91,313 to 91,477 _00460 PS417_00465: PS417_00465 - hypothetical protein, at 91,480 to 91,947 _00465 Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1 2at 90.153 kb on + strand, within PS417_00450at 90.154 kb on - strand, within PS417_00450at 90.324 kb on + strand, within PS417_00450at 90.475 kb on + strandat 90.475 kb on + strandat 90.475 kb on + strandat 90.476 kb on - strandat 90.535 kb on - strandat 90.589 kb on - strandat 90.594 kb on - strandat 90.594 kb on - strandat 90.610 kb on - strandat 90.643 kb on - strandat 90.675 kb on + strandat 90.675 kb on + strandat 90.676 kb on - strandat 90.676 kb on - strandat 90.676 kb on - strandat 90.692 kb on - strandat 90.729 kb on + strandat 90.730 kb on - strandat 90.908 kb on + strandat 90.908 kb on + strandat 90.909 kb on - strandat 90.925 kb on - strandat 90.981 kb on - strand, within PS417_00455at 91.143 kb on - strand, within PS417_00455at 91.143 kb on - strand, within PS417_00455at 91.231 kb on + strandat 91.232 kb on - strandat 91.274 kb on - strandat 91.283 kb on - strandat 91.289 kb on + strandat 91.289 kb on + strandat 91.300 kb on - strandat 91.714 kb on + strandat 91.714 kb on + strand, within PS417_00465at 91.714 kb on + strandat 91.715 kb on - strand, within PS417_00465at 91.715 kb on - strand, within PS417_00465at 91.801 kb on + strand, within PS417_00465at 91.801 kb on + strand, within PS417_00465at 91.802 kb on - strand, within PS417_00465at 91.843 kb on - strand, within PS417_00465at 91.935 kb on + strandat 91.936 kb on - strandat 91.936 kb on - strandat 91.942 kb on + strandat 91.942 kb on + strandat 91.945 kb on + strandat 91.945 kb on + strandat 91.945 kb on + strandat 91.945 kb on + strandat 91.945 kb on + strandat 91.946 kb on - strandat 91.946 kb on - strandat 91.946 kb on - strandat 91.946 kb on - strandat 91.946 kb on - strandat 92.090 kb on + strandat 92.090 kb on + strandat 92.185 kb on + strandat 92.207 kb on + strandat 92.207 kb on + strandat 92.207 kb on + strandat 92.207 kb on + strandat 92.208 kb on - strandat 92.208 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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90,153 + PS417_00450 0.69 +0.5
90,154 - PS417_00450 0.69 -0.4
90,324 + PS417_00450 0.82 +0.7
90,475 + -1.2
90,475 + +2.2
90,475 + -0.2
90,476 - -1.3
90,535 - +0.0
90,589 - -0.2
90,594 - -0.6
90,594 - +0.2
90,610 - -0.8
90,643 - +1.0
90,675 + +0.7
90,675 + -0.5
90,676 - +2.5
90,676 - +0.0
90,676 - +0.1
90,692 - +0.0
90,729 + +0.5
90,730 - -0.1
90,908 + +1.4
90,908 + -0.7
90,909 - +0.7
90,925 - +0.1
90,981 - PS417_00455 0.11 -1.5
91,143 - PS417_00455 0.68 -0.9
91,143 - PS417_00455 0.68 -0.7
91,231 + -0.1
91,232 - -0.4
91,274 - -1.2
91,283 - +0.4
91,289 + +0.5
91,289 + -0.1
91,300 - -0.4
91,714 + +1.7
91,714 + PS417_00465 0.50 -1.2
91,714 + +1.9
91,715 - PS417_00465 0.50 -0.9
91,715 - PS417_00465 0.50 -0.7
91,801 + PS417_00465 0.69 +0.6
91,801 + PS417_00465 0.69 -0.1
91,802 - PS417_00465 0.69 -0.3
91,843 - PS417_00465 0.78 -0.4
91,935 + -0.3
91,936 - +0.3
91,936 - -0.4
91,942 + -0.8
91,942 + +1.0
91,945 + -0.3
91,945 + -0.4
91,945 + -2.5
91,945 + +1.3
91,945 + -0.5
91,946 - +0.5
91,946 - -0.4
91,946 - +0.5
91,946 - +0.6
91,946 - -1.3
92,090 + -0.1
92,090 + +0.8
92,185 + +0.6
92,207 + -0.1
92,207 + +0.7
92,207 + -1.2
92,207 + -0.1
92,208 - -0.1
92,208 - -0.4

Or see this region's nucleotide sequence