Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20700 and PS417_20705 are separated by 10 nucleotides PS417_20705 and PS417_20710 are separated by 3 nucleotides PS417_20710 and PS417_20715 overlap by 4 nucleotides PS417_20715 and PS417_20720 are separated by 350 nucleotides
PS417_20700: PS417_20700 - cbb3-type cytochrome c oxidase subunit I, at 4,500,217 to 4,501,641
_20700
PS417_20705: PS417_20705 - cbb3-type cytochrome c oxidase subunit II, at 4,501,652 to 4,502,260
_20705
PS417_20710: PS417_20710 - cytochrome C oxidase, at 4,502,264 to 4,502,464
_20710
PS417_20715: PS417_20715 - cytochrome Cbb3, at 4,502,461 to 4,503,408
_20715
PS417_20720: PS417_20720 - cbb3-type cytochrome c oxidase subunit I, at 4,503,759 to 4,505,201
_20720
Position (kb)
4502
4503
4504 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4501.477 kb on + strand, within PS417_20700 at 4501.826 kb on + strand, within PS417_20705 at 4501.827 kb on - strand, within PS417_20705 at 4501.827 kb on - strand, within PS417_20705 at 4501.827 kb on - strand, within PS417_20705 at 4501.845 kb on + strand, within PS417_20705 at 4502.148 kb on - strand, within PS417_20705 at 4502.220 kb on - strand at 4502.446 kb on - strand at 4502.478 kb on + strand at 4502.478 kb on + strand at 4502.478 kb on + strand at 4502.478 kb on + strand at 4502.478 kb on + strand at 4502.479 kb on - strand at 4502.492 kb on + strand at 4502.609 kb on - strand, within PS417_20715 at 4502.609 kb on - strand, within PS417_20715 at 4502.609 kb on - strand, within PS417_20715 at 4503.232 kb on + strand, within PS417_20715 at 4503.233 kb on - strand, within PS417_20715 at 4503.238 kb on + strand, within PS417_20715 at 4503.239 kb on - strand, within PS417_20715 at 4503.406 kb on + strand at 4503.511 kb on + strand at 4503.665 kb on + strand at 4503.708 kb on + strand at 4503.708 kb on + strand at 4503.708 kb on + strand at 4503.708 kb on + strand at 4503.786 kb on + strand at 4503.787 kb on - strand at 4503.792 kb on + strand at 4503.792 kb on + strand at 4503.800 kb on - strand at 4503.994 kb on - strand, within PS417_20720 at 4503.997 kb on - strand, within PS417_20720 at 4504.183 kb on - strand, within PS417_20720 at 4504.233 kb on + strand, within PS417_20720 at 4504.234 kb on - strand, within PS417_20720
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 4,501,477 + PS417_20700 0.88 -1.7 4,501,826 + PS417_20705 0.29 -2.6 4,501,827 - PS417_20705 0.29 -1.7 4,501,827 - PS417_20705 0.29 -0.6 4,501,827 - PS417_20705 0.29 -0.5 4,501,845 + PS417_20705 0.32 -1.5 4,502,148 - PS417_20705 0.81 -1.9 4,502,220 - -0.8 4,502,446 - -2.1 4,502,478 + -4.2 4,502,478 + -1.2 4,502,478 + -1.7 4,502,478 + -1.3 4,502,478 + -0.4 4,502,479 - -2.3 4,502,492 + -2.1 4,502,609 - PS417_20715 0.16 +0.8 4,502,609 - PS417_20715 0.16 -0.5 4,502,609 - PS417_20715 0.16 -0.5 4,503,232 + PS417_20715 0.81 -1.6 4,503,233 - PS417_20715 0.81 -1.0 4,503,238 + PS417_20715 0.82 -1.5 4,503,239 - PS417_20715 0.82 +1.1 4,503,406 + +1.4 4,503,511 + +1.8 4,503,665 + -0.7 4,503,708 + -1.1 4,503,708 + +0.1 4,503,708 + +0.1 4,503,708 + +0.2 4,503,786 + -0.8 4,503,787 - +0.1 4,503,792 + -0.5 4,503,792 + +0.5 4,503,800 - -0.5 4,503,994 - PS417_20720 0.16 +0.2 4,503,997 - PS417_20720 0.16 -0.4 4,504,183 - PS417_20720 0.29 -0.1 4,504,233 + PS417_20720 0.33 -1.2 4,504,234 - PS417_20720 0.33 -0.2
Or see this region's nucleotide sequence