Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01820 and PS417_01825 are separated by 182 nucleotides PS417_01825 and PS417_01830 are separated by 87 nucleotides PS417_01830 and PS417_01835 overlap by 4 nucleotides
PS417_01820: PS417_01820 - chemotaxis protein, at 405,715 to 407,622
_01820
PS417_01825: PS417_01825 - chemotaxis protein, at 407,805 to 409,721
_01825
PS417_01830: PS417_01830 - 16S rRNA methyltransferase, at 409,809 to 410,516
_01830
PS417_01835: PS417_01835 - twin-arginine protein translocation system subunit TatC, at 410,513 to 411,301
_01835
Position (kb) 407
408
409
410 Strain fitness (log2 ratio) -1
0
1 at 406.890 kb on + strand, within PS417_01820 at 406.890 kb on + strand, within PS417_01820 at 406.936 kb on + strand, within PS417_01820 at 407.034 kb on - strand, within PS417_01820 at 407.301 kb on - strand, within PS417_01820 at 407.344 kb on - strand, within PS417_01820 at 407.344 kb on - strand, within PS417_01820 at 407.383 kb on - strand, within PS417_01820 at 407.489 kb on + strand at 409.156 kb on + strand, within PS417_01825 at 409.156 kb on + strand, within PS417_01825 at 409.364 kb on + strand, within PS417_01825 at 409.365 kb on - strand, within PS417_01825 at 409.365 kb on - strand, within PS417_01825 at 409.633 kb on - strand at 409.644 kb on + strand at 409.645 kb on - strand at 409.645 kb on - strand at 409.789 kb on + strand at 410.189 kb on - strand, within PS417_01830
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 406,890 + PS417_01820 0.62 +0.3 406,890 + PS417_01820 0.62 +0.1 406,936 + PS417_01820 0.64 +1.7 407,034 - PS417_01820 0.69 -0.2 407,301 - PS417_01820 0.83 +0.9 407,344 - PS417_01820 0.85 +0.3 407,344 - PS417_01820 0.85 -0.1 407,383 - PS417_01820 0.87 -0.3 407,489 + +0.3 409,156 + PS417_01825 0.70 -1.1 409,156 + PS417_01825 0.70 -0.2 409,364 + PS417_01825 0.81 -1.2 409,365 - PS417_01825 0.81 -1.1 409,365 - PS417_01825 0.81 +0.2 409,633 - +0.0 409,644 + -0.1 409,645 - -0.1 409,645 - +0.3 409,789 + -0.3 410,189 - PS417_01830 0.54 -0.2
Or see this region's nucleotide sequence