Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16690 and PS417_16695 overlap by 8 nucleotides PS417_16695 and PS417_16700 overlap by 4 nucleotides PS417_16700 and PS417_16705 are separated by 59 nucleotides PS417_16705 and PS417_16710 are separated by 26 nucleotides
PS417_16690: PS417_16690 - hypothetical protein, at 3,644,306 to 3,644,758
_16690
PS417_16695: PS417_16695 - hypothetical protein, at 3,644,751 to 3,645,500
_16695
PS417_16700: PS417_16700 - hypothetical protein, at 3,645,497 to 3,646,321
_16700
PS417_16705: PS417_16705 - hypothetical protein, at 3,646,381 to 3,646,653
_16705
PS417_16710: PS417_16710 - hydrolase, at 3,646,680 to 3,647,441
_16710
Position (kb)
3645
3646
3647 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3644.804 kb on - strand at 3645.235 kb on + strand, within PS417_16695 at 3645.236 kb on - strand, within PS417_16695 at 3645.236 kb on - strand, within PS417_16695 at 3645.344 kb on - strand, within PS417_16695 at 3645.385 kb on + strand, within PS417_16695 at 3645.385 kb on + strand, within PS417_16695 at 3645.483 kb on + strand at 3645.787 kb on + strand, within PS417_16700 at 3645.839 kb on - strand, within PS417_16700 at 3645.880 kb on - strand, within PS417_16700 at 3645.880 kb on - strand, within PS417_16700 at 3645.973 kb on - strand, within PS417_16700 at 3646.174 kb on + strand, within PS417_16700 at 3646.175 kb on - strand, within PS417_16700 at 3646.387 kb on - strand at 3646.681 kb on + strand at 3646.681 kb on + strand at 3646.741 kb on + strand at 3646.741 kb on + strand at 3646.792 kb on + strand, within PS417_16710 at 3646.792 kb on + strand, within PS417_16710 at 3646.881 kb on + strand, within PS417_16710 at 3647.269 kb on + strand at 3647.269 kb on + strand, within PS417_16710
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 3,644,804 - +1.7 3,645,235 + PS417_16695 0.65 +0.4 3,645,236 - PS417_16695 0.65 -0.2 3,645,236 - PS417_16695 0.65 -0.1 3,645,344 - PS417_16695 0.79 -0.1 3,645,385 + PS417_16695 0.85 +0.2 3,645,385 + PS417_16695 0.85 +0.4 3,645,483 + +0.2 3,645,787 + PS417_16700 0.35 -0.3 3,645,839 - PS417_16700 0.41 -0.2 3,645,880 - PS417_16700 0.46 -0.2 3,645,880 - PS417_16700 0.46 -0.2 3,645,973 - PS417_16700 0.58 -2.5 3,646,174 + PS417_16700 0.82 -1.0 3,646,175 - PS417_16700 0.82 -0.6 3,646,387 - +1.0 3,646,681 + +0.0 3,646,681 + +2.0 3,646,741 + -0.5 3,646,741 + -0.4 3,646,792 + PS417_16710 0.15 +0.1 3,646,792 + PS417_16710 0.15 -0.4 3,646,881 + PS417_16710 0.26 +0.6 3,647,269 + +0.5 3,647,269 + PS417_16710 0.77 +0.2
Or see this region's nucleotide sequence