Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_12535 and PS417_12540 are separated by 39 nucleotides PS417_12540 and PS417_12545 are separated by 12 nucleotides
PS417_12535: PS417_12535 - nitrilase, at 2,726,822 to 2,727,748
_12535
PS417_12540: PS417_12540 - hypothetical protein, at 2,727,788 to 2,728,249
_12540
PS417_12545: PS417_12545 - xanthine permease XanP, at 2,728,262 to 2,729,689
_12545
Position (kb)
2727
2728
2729 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2726.805 kb on + strand at 2726.904 kb on - strand at 2726.904 kb on - strand at 2727.049 kb on + strand, within PS417_12535 at 2727.353 kb on + strand, within PS417_12535 at 2727.353 kb on + strand, within PS417_12535 at 2727.657 kb on - strand at 2727.657 kb on - strand at 2727.734 kb on + strand at 2727.734 kb on + strand at 2727.882 kb on + strand, within PS417_12540 at 2727.883 kb on - strand, within PS417_12540 at 2728.068 kb on + strand, within PS417_12540 at 2728.253 kb on + strand at 2728.253 kb on + strand at 2728.253 kb on + strand at 2728.254 kb on - strand at 2728.254 kb on - strand at 2728.254 kb on - strand at 2728.263 kb on + strand at 2728.263 kb on + strand at 2728.338 kb on - strand at 2728.668 kb on + strand, within PS417_12545 at 2728.811 kb on - strand, within PS417_12545 at 2728.811 kb on - strand, within PS417_12545 at 2728.812 kb on + strand, within PS417_12545 at 2728.813 kb on - strand, within PS417_12545 at 2728.813 kb on - strand, within PS417_12545 at 2729.109 kb on - strand, within PS417_12545 at 2729.129 kb on - strand, within PS417_12545 at 2729.132 kb on - strand, within PS417_12545
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 remove 2,726,805 + -0.3 2,726,904 - +1.1 2,726,904 - -0.3 2,727,049 + PS417_12535 0.24 -0.5 2,727,353 + PS417_12535 0.57 -0.2 2,727,353 + PS417_12535 0.57 -0.1 2,727,657 - -0.1 2,727,657 - -0.4 2,727,734 + -0.0 2,727,734 + +0.1 2,727,882 + PS417_12540 0.20 -0.2 2,727,883 - PS417_12540 0.21 -1.0 2,728,068 + PS417_12540 0.61 -1.3 2,728,253 + +0.3 2,728,253 + -0.5 2,728,253 + +0.4 2,728,254 - +0.2 2,728,254 - -2.4 2,728,254 - +2.5 2,728,263 + +0.2 2,728,263 + +0.1 2,728,338 - +1.2 2,728,668 + PS417_12545 0.28 -0.3 2,728,811 - PS417_12545 0.38 +0.5 2,728,811 - PS417_12545 0.38 +0.5 2,728,812 + PS417_12545 0.39 -0.4 2,728,813 - PS417_12545 0.39 -0.8 2,728,813 - PS417_12545 0.39 -0.3 2,729,109 - PS417_12545 0.59 +0.2 2,729,129 - PS417_12545 0.61 -0.7 2,729,132 - PS417_12545 0.61 +2.0
Or see this region's nucleotide sequence