Strain Fitness in Pseudomonas simiae WCS417 around PS417_09740

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_09730 and PS417_09735 are separated by 96 nucleotidesPS417_09735 and PS417_09740 are separated by 84 nucleotidesPS417_09740 and PS417_09745 are separated by 17 nucleotides PS417_09730: PS417_09730 - adenylylsulfate kinase, at 2,108,871 to 2,109,485 _09730 PS417_09735: PS417_09735 - hypothetical protein, at 2,109,582 to 2,110,226 _09735 PS417_09740: PS417_09740 - RNA polymerase subunit sigma-24, at 2,110,311 to 2,110,811 _09740 PS417_09745: PS417_09745 - peptide ABC transporter substrate-binding protein, at 2,110,829 to 2,111,779 _09745 Position (kb) 2110 2111Strain fitness (log2 ratio) -2 -1 0 1at 2109.322 kb on - strand, within PS417_09730at 2109.323 kb on + strand, within PS417_09730at 2109.382 kb on + strand, within PS417_09730at 2109.383 kb on - strand, within PS417_09730at 2109.483 kb on + strandat 2109.484 kb on - strandat 2109.537 kb on + strandat 2109.538 kb on - strandat 2109.647 kb on + strand, within PS417_09735at 2109.653 kb on + strand, within PS417_09735at 2109.777 kb on + strand, within PS417_09735at 2109.777 kb on + strand, within PS417_09735at 2109.778 kb on - strand, within PS417_09735at 2109.778 kb on - strand, within PS417_09735at 2109.810 kb on + strand, within PS417_09735at 2109.881 kb on - strand, within PS417_09735at 2110.061 kb on - strand, within PS417_09735at 2110.224 kb on + strandat 2110.224 kb on + strandat 2110.224 kb on + strandat 2110.353 kb on + strandat 2110.353 kb on + strandat 2110.354 kb on - strandat 2110.354 kb on - strandat 2110.479 kb on + strandat 2110.545 kb on - strand, within PS417_09740at 2110.545 kb on - strand, within PS417_09740at 2110.755 kb on + strand, within PS417_09740at 2110.758 kb on - strand, within PS417_09740at 2110.928 kb on - strand, within PS417_09745at 2111.141 kb on + strand, within PS417_09745at 2111.430 kb on + strand, within PS417_09745at 2111.638 kb on + strand, within PS417_09745at 2111.639 kb on - strand, within PS417_09745at 2111.639 kb on - strand, within PS417_09745

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50
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2,109,322 - PS417_09730 0.73 +0.2
2,109,323 + PS417_09730 0.73 +0.4
2,109,382 + PS417_09730 0.83 -0.0
2,109,383 - PS417_09730 0.83 +0.4
2,109,483 + -0.5
2,109,484 - -0.3
2,109,537 + -0.1
2,109,538 - -0.5
2,109,647 + PS417_09735 0.10 -0.1
2,109,653 + PS417_09735 0.11 -0.1
2,109,777 + PS417_09735 0.30 -0.4
2,109,777 + PS417_09735 0.30 -0.0
2,109,778 - PS417_09735 0.30 -2.5
2,109,778 - PS417_09735 0.30 +0.4
2,109,810 + PS417_09735 0.35 +0.7
2,109,881 - PS417_09735 0.46 -1.1
2,110,061 - PS417_09735 0.74 -0.3
2,110,224 + +0.8
2,110,224 + +0.5
2,110,224 + -2.3
2,110,353 + -0.7
2,110,353 + -0.4
2,110,354 - +0.3
2,110,354 - -0.1
2,110,479 + +0.6
2,110,545 - PS417_09740 0.47 -0.1
2,110,545 - PS417_09740 0.47 -0.1
2,110,755 + PS417_09740 0.89 -0.2
2,110,758 - PS417_09740 0.89 -0.4
2,110,928 - PS417_09745 0.10 +0.0
2,111,141 + PS417_09745 0.33 -0.5
2,111,430 + PS417_09745 0.63 -0.3
2,111,638 + PS417_09745 0.85 -0.9
2,111,639 - PS417_09745 0.85 -0.5
2,111,639 - PS417_09745 0.85 +0.1

Or see this region's nucleotide sequence