Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27560 and PS417_27565 overlap by 4 nucleotides PS417_27565 and PS417_27570 are separated by 352 nucleotides
PS417_27560: PS417_27560 - adenylate cyclase, at 5,944,796 to 5,947,636
_27560
PS417_27565: PS417_27565 - nucleoside diphosphate kinase regulator, at 5,947,633 to 5,948,046
_27565
PS417_27570: PS417_27570 - frataxin, at 5,948,399 to 5,948,731
_27570
Position (kb) 5947
5948
5949 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5946.714 kb on - strand, within PS417_27560 at 5946.858 kb on - strand, within PS417_27560 at 5946.921 kb on + strand, within PS417_27560 at 5946.922 kb on - strand, within PS417_27560 at 5946.922 kb on - strand at 5946.954 kb on - strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.100 kb on + strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.101 kb on - strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.265 kb on + strand, within PS417_27560 at 5947.266 kb on - strand, within PS417_27560 at 5947.266 kb on - strand, within PS417_27560 at 5947.266 kb on - strand, within PS417_27560 at 5947.275 kb on + strand, within PS417_27560 at 5947.275 kb on + strand, within PS417_27560 at 5947.275 kb on + strand, within PS417_27560 at 5947.276 kb on - strand, within PS417_27560 at 5947.352 kb on + strand, within PS417_27560 at 5947.352 kb on + strand, within PS417_27560 at 5947.395 kb on + strand at 5947.395 kb on + strand at 5947.399 kb on + strand at 5947.400 kb on - strand at 5947.400 kb on - strand at 5947.400 kb on - strand at 5947.409 kb on + strand at 5947.522 kb on - strand at 5947.578 kb on - strand at 5947.578 kb on - strand at 5948.321 kb on + strand at 5948.322 kb on - strand at 5948.352 kb on - strand at 5948.852 kb on + strand at 5948.853 kb on - strand at 5948.946 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,946,714 - PS417_27560 0.68 -1.2 5,946,858 - PS417_27560 0.73 -1.4 5,946,921 + PS417_27560 0.75 +1.1 5,946,922 - PS417_27560 0.75 -1.6 5,946,922 - +1.4 5,946,954 - PS417_27560 0.76 -0.3 5,947,100 + PS417_27560 0.81 -1.5 5,947,100 + PS417_27560 0.81 -0.1 5,947,100 + PS417_27560 0.81 +2.2 5,947,100 + PS417_27560 0.81 -0.2 5,947,100 + PS417_27560 0.81 +0.3 5,947,100 + PS417_27560 0.81 +0.6 5,947,101 - PS417_27560 0.81 -1.5 5,947,101 - PS417_27560 0.81 -0.9 5,947,101 - PS417_27560 0.81 -0.3 5,947,101 - PS417_27560 0.81 +0.3 5,947,101 - PS417_27560 0.81 -0.2 5,947,101 - PS417_27560 0.81 -2.8 5,947,265 + PS417_27560 0.87 -0.8 5,947,265 + PS417_27560 0.87 -0.3 5,947,265 + PS417_27560 0.87 -0.4 5,947,265 + PS417_27560 0.87 +0.4 5,947,265 + PS417_27560 0.87 -0.4 5,947,265 + PS417_27560 0.87 +0.3 5,947,266 - PS417_27560 0.87 -0.9 5,947,266 - PS417_27560 0.87 +0.1 5,947,266 - PS417_27560 0.87 +2.8 5,947,275 + PS417_27560 0.87 +0.0 5,947,275 + PS417_27560 0.87 +0.7 5,947,275 + PS417_27560 0.87 +0.4 5,947,276 - PS417_27560 0.87 +1.2 5,947,352 + PS417_27560 0.90 +0.8 5,947,352 + PS417_27560 0.90 -0.1 5,947,395 + -1.4 5,947,395 + -0.4 5,947,399 + +0.1 5,947,400 - -0.2 5,947,400 - -1.3 5,947,400 - +0.0 5,947,409 + -1.8 5,947,522 - -2.5 5,947,578 - +0.2 5,947,578 - +1.0 5,948,321 + -0.9 5,948,322 - +1.6 5,948,352 - +0.5 5,948,852 + +0.7 5,948,853 - -3.6 5,948,946 + +0.3
Or see this region's nucleotide sequence