Strain Fitness in Pseudomonas simiae WCS417 around PS417_27030

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_27025 and PS417_27030 are separated by 243 nucleotidesPS417_27030 and PS417_27035 are separated by 21 nucleotides PS417_27025: PS417_27025 - DNA-binding protein, at 5,835,833 to 5,836,759 _27025 PS417_27030: PS417_27030 - hypothetical protein, at 5,837,003 to 5,837,668 _27030 PS417_27035: PS417_27035 - FAD-linked oxidase, at 5,837,690 to 5,839,084 _27035 Position (kb) 5837 5838Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5836.150 kb on + strand, within PS417_27025at 5836.257 kb on + strand, within PS417_27025at 5836.257 kb on + strand, within PS417_27025at 5836.257 kb on + strand, within PS417_27025at 5836.258 kb on - strand, within PS417_27025at 5836.258 kb on - strand, within PS417_27025at 5836.258 kb on - strand, within PS417_27025at 5836.494 kb on + strand, within PS417_27025at 5836.494 kb on + strand, within PS417_27025at 5836.495 kb on - strand, within PS417_27025at 5836.561 kb on - strand, within PS417_27025at 5836.561 kb on - strand, within PS417_27025at 5836.575 kb on - strand, within PS417_27025at 5836.787 kb on + strandat 5836.788 kb on - strandat 5836.890 kb on - strandat 5837.594 kb on - strand, within PS417_27030at 5837.649 kb on + strandat 5837.649 kb on + strandat 5837.649 kb on + strandat 5837.649 kb on + strandat 5837.649 kb on + strandat 5837.649 kb on + strandat 5837.649 kb on + strandat 5837.650 kb on - strandat 5837.650 kb on - strandat 5837.662 kb on - strandat 5837.760 kb on + strandat 5837.787 kb on + strandat 5838.511 kb on + strand, within PS417_27035

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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5,836,150 + PS417_27025 0.34 -0.1
5,836,257 + PS417_27025 0.46 -1.9
5,836,257 + PS417_27025 0.46 +4.1
5,836,257 + PS417_27025 0.46 -2.3
5,836,258 - PS417_27025 0.46 -0.1
5,836,258 - PS417_27025 0.46 -2.7
5,836,258 - PS417_27025 0.46 -0.7
5,836,494 + PS417_27025 0.71 -0.6
5,836,494 + PS417_27025 0.71 +2.8
5,836,495 - PS417_27025 0.71 +0.0
5,836,561 - PS417_27025 0.79 +0.7
5,836,561 - PS417_27025 0.79 -2.7
5,836,575 - PS417_27025 0.80 -0.3
5,836,787 + -2.7
5,836,788 - +1.8
5,836,890 - +0.8
5,837,594 - PS417_27030 0.89 -1.7
5,837,649 + -0.3
5,837,649 + +0.3
5,837,649 + -1.6
5,837,649 + -1.0
5,837,649 + -3.1
5,837,649 + -0.9
5,837,649 + +1.1
5,837,650 - +1.5
5,837,650 - -0.8
5,837,662 - -2.0
5,837,760 + -0.7
5,837,787 + -0.5
5,838,511 + PS417_27035 0.59 -0.8

Or see this region's nucleotide sequence