Strain Fitness in Pseudomonas simiae WCS417 around PS417_26785

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_26775 and PS417_26780 are separated by 52 nucleotidesPS417_26780 and PS417_26785 are separated by 71 nucleotidesPS417_26785 and PS417_26790 are separated by 74 nucleotidesPS417_26790 and PS417_26795 are separated by 108 nucleotides PS417_26775: PS417_26775 - thiazole synthase, at 5,783,395 to 5,784,189 _26775 PS417_26780: PS417_26780 - thiamine biosynthesis protein ThiS, at 5,784,242 to 5,784,442 _26780 PS417_26785: PS417_26785 - membrane protein, at 5,784,514 to 5,784,891 _26785 PS417_26790: PS417_26790 - peptidoglycan transglycosylase, at 5,784,966 to 5,785,688 _26790 PS417_26795: PS417_26795 - RNA polymerase sigma 70, at 5,785,797 to 5,786,651 _26795 Position (kb) 5784 5785Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5783.771 kb on + strand, within PS417_26775at 5783.771 kb on + strandat 5783.772 kb on - strand, within PS417_26775at 5783.942 kb on + strand, within PS417_26775at 5783.973 kb on - strand, within PS417_26775at 5784.107 kb on + strand, within PS417_26775at 5784.141 kb on - strandat 5784.144 kb on + strandat 5784.144 kb on + strandat 5784.174 kb on + strandat 5784.633 kb on - strand, within PS417_26785at 5784.705 kb on + strand, within PS417_26785at 5784.705 kb on + strand, within PS417_26785at 5784.706 kb on - strand, within PS417_26785at 5784.706 kb on - strand, within PS417_26785at 5784.706 kb on - strand, within PS417_26785at 5784.706 kb on - strand, within PS417_26785at 5784.759 kb on - strand, within PS417_26785at 5784.927 kb on + strandat 5784.927 kb on + strandat 5784.927 kb on + strandat 5784.927 kb on + strandat 5784.927 kb on + strandat 5784.928 kb on - strandat 5784.928 kb on - strandat 5784.928 kb on - strandat 5784.928 kb on - strandat 5784.929 kb on + strandat 5784.930 kb on - strandat 5784.930 kb on - strandat 5784.965 kb on + strandat 5784.965 kb on + strandat 5785.082 kb on - strand, within PS417_26790at 5785.341 kb on + strand, within PS417_26790at 5785.342 kb on - strand, within PS417_26790at 5785.524 kb on + strand, within PS417_26790at 5785.524 kb on + strand, within PS417_26790at 5785.582 kb on - strand, within PS417_26790at 5785.582 kb on - strand, within PS417_26790at 5785.734 kb on + strandat 5785.734 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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5,783,771 + PS417_26775 0.47 +0.2
5,783,771 + +2.7
5,783,772 - PS417_26775 0.47 +3.0
5,783,942 + PS417_26775 0.69 +0.7
5,783,973 - PS417_26775 0.73 +0.3
5,784,107 + PS417_26775 0.90 -0.6
5,784,141 - +1.4
5,784,144 + +1.2
5,784,144 + -0.3
5,784,174 + +0.1
5,784,633 - PS417_26785 0.31 +2.9
5,784,705 + PS417_26785 0.51 +1.7
5,784,705 + PS417_26785 0.51 -2.8
5,784,706 - PS417_26785 0.51 -1.4
5,784,706 - PS417_26785 0.51 +1.8
5,784,706 - PS417_26785 0.51 -0.3
5,784,706 - PS417_26785 0.51 +0.7
5,784,759 - PS417_26785 0.65 +0.1
5,784,927 + -0.9
5,784,927 + +1.0
5,784,927 + -1.7
5,784,927 + -1.4
5,784,927 + +1.0
5,784,928 - -1.8
5,784,928 - +1.0
5,784,928 - +0.7
5,784,928 - -0.7
5,784,929 + -1.6
5,784,930 - +0.5
5,784,930 - +2.1
5,784,965 + +1.6
5,784,965 + +0.1
5,785,082 - PS417_26790 0.16 +0.1
5,785,341 + PS417_26790 0.52 -2.4
5,785,342 - PS417_26790 0.52 +1.2
5,785,524 + PS417_26790 0.77 -1.0
5,785,524 + PS417_26790 0.77 +1.7
5,785,582 - PS417_26790 0.85 -1.2
5,785,582 - PS417_26790 0.85 -0.8
5,785,734 + -0.4
5,785,734 + -0.7

Or see this region's nucleotide sequence