Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24090 and PS417_24095 are separated by 168 nucleotides PS417_24095 and PS417_24100 are separated by 36 nucleotides PS417_24100 and PS417_24105 are separated by 252 nucleotides
PS417_24090: PS417_24090 - ribosome association toxin RatA, at 5,215,911 to 5,216,345
_24090
PS417_24095: PS417_24095 - SsrA-binding protein, at 5,216,514 to 5,216,996
_24095
PS417_24100: PS417_24100 - transcriptional regulator PdhR, at 5,217,033 to 5,217,800
_24100
PS417_24105: PS417_24105 - D-lactate transporter (lctP family) <small>(from data)</small>, at 5,218,053 to 5,219,747
_24105
Position (kb) 5217
5218 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5216.499 kb on + strand at 5217.035 kb on - strand at 5217.035 kb on - strand at 5217.109 kb on + strand at 5217.110 kb on - strand, within PS417_24100 at 5217.172 kb on + strand, within PS417_24100 at 5217.172 kb on + strand, within PS417_24100 at 5217.173 kb on - strand, within PS417_24100 at 5217.226 kb on + strand, within PS417_24100 at 5217.226 kb on + strand, within PS417_24100 at 5217.227 kb on - strand, within PS417_24100 at 5217.227 kb on - strand, within PS417_24100 at 5217.227 kb on - strand, within PS417_24100 at 5217.227 kb on - strand, within PS417_24100 at 5217.389 kb on - strand, within PS417_24100 at 5217.461 kb on - strand, within PS417_24100 at 5217.463 kb on + strand, within PS417_24100 at 5217.584 kb on - strand, within PS417_24100 at 5217.584 kb on - strand, within PS417_24100 at 5217.584 kb on - strand, within PS417_24100 at 5217.587 kb on + strand, within PS417_24100 at 5217.841 kb on - strand at 5217.871 kb on + strand at 5217.872 kb on - strand at 5217.872 kb on - strand at 5217.920 kb on + strand at 5217.921 kb on - strand at 5217.921 kb on - strand at 5217.972 kb on - strand at 5218.074 kb on + strand at 5218.075 kb on - strand at 5218.119 kb on - strand at 5218.130 kb on - strand at 5218.130 kb on - strand at 5218.130 kb on - strand at 5218.187 kb on + strand at 5218.187 kb on + strand at 5218.323 kb on + strand, within PS417_24105 at 5218.408 kb on + strand, within PS417_24105 at 5218.409 kb on - strand, within PS417_24105 at 5218.516 kb on - strand, within PS417_24105 at 5218.767 kb on + strand, within PS417_24105 at 5218.767 kb on + strand, within PS417_24105 at 5218.768 kb on - strand, within PS417_24105 at 5218.768 kb on - strand, within PS417_24105
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 5,216,499 + -1.7 5,217,035 - +0.2 5,217,035 - -1.0 5,217,109 + +0.4 5,217,110 - PS417_24100 0.10 -0.5 5,217,172 + PS417_24100 0.18 -0.8 5,217,172 + PS417_24100 0.18 -2.1 5,217,173 - PS417_24100 0.18 -1.5 5,217,226 + PS417_24100 0.25 +0.4 5,217,226 + PS417_24100 0.25 -0.6 5,217,227 - PS417_24100 0.25 -1.0 5,217,227 - PS417_24100 0.25 -0.7 5,217,227 - PS417_24100 0.25 -0.7 5,217,227 - PS417_24100 0.25 -0.7 5,217,389 - PS417_24100 0.46 -0.4 5,217,461 - PS417_24100 0.56 -1.9 5,217,463 + PS417_24100 0.56 -0.8 5,217,584 - PS417_24100 0.72 +0.6 5,217,584 - PS417_24100 0.72 -0.6 5,217,584 - PS417_24100 0.72 -1.4 5,217,587 + PS417_24100 0.72 +0.3 5,217,841 - +0.3 5,217,871 + +0.0 5,217,872 - -0.9 5,217,872 - -1.0 5,217,920 + -1.0 5,217,921 - -0.6 5,217,921 - +2.4 5,217,972 - +1.2 5,218,074 + -1.6 5,218,075 - +0.4 5,218,119 - -1.5 5,218,130 - +1.1 5,218,130 - +0.7 5,218,130 - +2.4 5,218,187 + -1.1 5,218,187 + +1.1 5,218,323 + PS417_24105 0.16 +0.2 5,218,408 + PS417_24105 0.21 -0.5 5,218,409 - PS417_24105 0.21 +0.6 5,218,516 - PS417_24105 0.27 -1.1 5,218,767 + PS417_24105 0.42 -0.2 5,218,767 + PS417_24105 0.42 -1.6 5,218,768 - PS417_24105 0.42 -4.4 5,218,768 - PS417_24105 0.42 +1.9
Or see this region's nucleotide sequence