Strain Fitness in Pseudomonas simiae WCS417 around PS417_22020

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_22010 and PS417_22015 are separated by 133 nucleotidesPS417_22015 and PS417_22020 are separated by 113 nucleotidesPS417_22020 and PS417_22025 are separated by 166 nucleotides PS417_22010: PS417_22010 - MFS transporter, at 4,771,742 to 4,773,154 _22010 PS417_22015: PS417_22015 - hypothetical protein, at 4,773,288 to 4,773,785 _22015 PS417_22020: PS417_22020 - pili assembly chaperone, at 4,773,899 to 4,775,218 _22020 PS417_22025: PS417_22025 - LysR family transcriptional regulator, at 4,775,385 to 4,776,254 _22025 Position (kb) 4773 4774 4775 4776Strain fitness (log2 ratio) -2 -1 0 1 2at 4773.213 kb on + strandat 4773.243 kb on - strandat 4773.524 kb on - strand, within PS417_22015at 4773.571 kb on - strand, within PS417_22015at 4774.213 kb on + strand, within PS417_22020at 4774.214 kb on - strand, within PS417_22020at 4774.476 kb on + strand, within PS417_22020at 4774.476 kb on + strand, within PS417_22020at 4774.477 kb on - strand, within PS417_22020at 4774.477 kb on - strand, within PS417_22020at 4774.510 kb on - strand, within PS417_22020at 4774.510 kb on - strand, within PS417_22020at 4774.609 kb on - strand, within PS417_22020at 4774.609 kb on - strand, within PS417_22020at 4774.680 kb on + strand, within PS417_22020at 4774.875 kb on + strand, within PS417_22020at 4774.875 kb on + strand, within PS417_22020at 4774.875 kb on + strand, within PS417_22020at 4774.876 kb on - strand, within PS417_22020at 4774.876 kb on - strand, within PS417_22020at 4774.992 kb on + strand, within PS417_22020at 4775.320 kb on + strandat 4775.320 kb on + strandat 4775.320 kb on + strandat 4775.320 kb on + strandat 4775.320 kb on + strandat 4775.321 kb on - strandat 4775.322 kb on + strandat 4775.323 kb on - strandat 4775.356 kb on + strandat 4775.673 kb on + strand, within PS417_22025at 4775.883 kb on - strand, within PS417_22025at 4776.014 kb on + strand, within PS417_22025

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,773,213 + +1.2
4,773,243 - +0.0
4,773,524 - PS417_22015 0.47 -2.6
4,773,571 - PS417_22015 0.57 -0.5
4,774,213 + PS417_22020 0.24 +0.0
4,774,214 - PS417_22020 0.24 -0.7
4,774,476 + PS417_22020 0.44 -0.9
4,774,476 + PS417_22020 0.44 -0.7
4,774,477 - PS417_22020 0.44 -2.0
4,774,477 - PS417_22020 0.44 -1.6
4,774,510 - PS417_22020 0.46 -0.3
4,774,510 - PS417_22020 0.46 -1.0
4,774,609 - PS417_22020 0.54 +0.5
4,774,609 - PS417_22020 0.54 -0.1
4,774,680 + PS417_22020 0.59 +2.0
4,774,875 + PS417_22020 0.74 +0.6
4,774,875 + PS417_22020 0.74 -1.5
4,774,875 + PS417_22020 0.74 -0.2
4,774,876 - PS417_22020 0.74 -0.5
4,774,876 - PS417_22020 0.74 +0.7
4,774,992 + PS417_22020 0.83 -1.9
4,775,320 + -0.3
4,775,320 + +0.9
4,775,320 + +0.3
4,775,320 + -0.8
4,775,320 + -0.0
4,775,321 - +1.3
4,775,322 + -0.7
4,775,323 - +1.3
4,775,356 + -0.1
4,775,673 + PS417_22025 0.33 -0.5
4,775,883 - PS417_22025 0.57 -1.8
4,776,014 + PS417_22025 0.72 -0.4

Or see this region's nucleotide sequence