Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21680 and PS417_21685 are separated by 11 nucleotides PS417_21685 and PS417_21690 are separated by 39 nucleotides
PS417_21680: PS417_21680 - succinylglutamate desuccinylase, at 4,702,865 to 4,703,869
_21680
PS417_21685: PS417_21685 - topoisomerase II, at 4,703,881 to 4,704,171
_21685
PS417_21690: PS417_21690 - N-succinylarginine dihydrolase, at 4,704,211 to 4,705,557
_21690
Position (kb)
4703
4704
4705 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4702.945 kb on + strand at 4702.946 kb on - strand at 4703.233 kb on + strand, within PS417_21680 at 4703.259 kb on + strand, within PS417_21680 at 4703.259 kb on + strand, within PS417_21680 at 4703.883 kb on - strand at 4704.171 kb on + strand at 4704.176 kb on + strand at 4704.177 kb on - strand at 4704.189 kb on + strand at 4704.190 kb on - strand at 4704.190 kb on - strand at 4704.213 kb on - strand at 4704.540 kb on - strand, within PS417_21690 at 4704.632 kb on + strand, within PS417_21690 at 4704.632 kb on + strand, within PS417_21690 at 4704.633 kb on - strand, within PS417_21690 at 4704.767 kb on + strand, within PS417_21690 at 4704.767 kb on + strand at 4704.767 kb on + strand, within PS417_21690 at 4704.768 kb on - strand, within PS417_21690 at 4704.851 kb on + strand, within PS417_21690 at 4705.089 kb on + strand, within PS417_21690 at 4705.089 kb on + strand, within PS417_21690
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,702,945 + +0.8 4,702,946 - +0.1 4,703,233 + PS417_21680 0.37 -0.8 4,703,259 + PS417_21680 0.39 -0.6 4,703,259 + PS417_21680 0.39 -1.3 4,703,883 - +0.6 4,704,171 + -0.7 4,704,176 + -0.7 4,704,177 - -0.3 4,704,189 + +0.3 4,704,190 - +0.4 4,704,190 - +1.7 4,704,213 - -1.4 4,704,540 - PS417_21690 0.24 -2.3 4,704,632 + PS417_21690 0.31 +0.1 4,704,632 + PS417_21690 0.31 -0.7 4,704,633 - PS417_21690 0.31 -0.5 4,704,767 + PS417_21690 0.41 -2.3 4,704,767 + +2.7 4,704,767 + PS417_21690 0.41 -2.4 4,704,768 - PS417_21690 0.41 -0.6 4,704,851 + PS417_21690 0.48 -0.1 4,705,089 + PS417_21690 0.65 +0.5 4,705,089 + PS417_21690 0.65 -1.4
Or see this region's nucleotide sequence