Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19365 and PS417_19370 are separated by 1 nucleotides PS417_19370 and PS417_19375 are separated by 111 nucleotides
PS417_19365: PS417_19365 - ABC transporter substrate-binding protein, at 4,196,335 to 4,197,660
_19365
PS417_19370: PS417_19370 - citrate transporter, at 4,197,662 to 4,198,954
_19370
PS417_19375: PS417_19375 - LysR family transcriptional regulator, at 4,199,066 to 4,199,962
_19375
Position (kb) 4197
4198
4199 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4196.784 kb on + strand at 4196.840 kb on + strand, within PS417_19365 at 4196.841 kb on - strand, within PS417_19365 at 4196.865 kb on - strand, within PS417_19365 at 4196.865 kb on - strand, within PS417_19365 at 4196.868 kb on + strand, within PS417_19365 at 4196.868 kb on + strand, within PS417_19365 at 4196.868 kb on + strand, within PS417_19365 at 4196.868 kb on + strand, within PS417_19365 at 4196.869 kb on - strand at 4196.869 kb on - strand, within PS417_19365 at 4196.926 kb on - strand, within PS417_19365 at 4197.352 kb on - strand, within PS417_19365 at 4197.352 kb on - strand, within PS417_19365 at 4197.352 kb on - strand, within PS417_19365 at 4197.356 kb on - strand, within PS417_19365 at 4197.402 kb on + strand, within PS417_19365 at 4197.402 kb on + strand, within PS417_19365 at 4197.913 kb on - strand, within PS417_19370 at 4198.152 kb on + strand, within PS417_19370 at 4198.289 kb on - strand, within PS417_19370 at 4198.550 kb on - strand, within PS417_19370 at 4198.569 kb on + strand, within PS417_19370 at 4198.570 kb on - strand, within PS417_19370 at 4198.673 kb on - strand, within PS417_19370 at 4198.930 kb on + strand at 4198.994 kb on + strand at 4199.047 kb on + strand at 4199.048 kb on - strand at 4199.401 kb on - strand, within PS417_19375 at 4199.401 kb on - strand, within PS417_19375 at 4199.738 kb on + strand, within PS417_19375 at 4199.738 kb on + strand, within PS417_19375 at 4199.738 kb on + strand, within PS417_19375 at 4199.738 kb on + strand, within PS417_19375 at 4199.738 kb on + strand, within PS417_19375 at 4199.739 kb on - strand, within PS417_19375 at 4199.739 kb on - strand, within PS417_19375 at 4199.739 kb on - strand, within PS417_19375 at 4199.739 kb on - strand, within PS417_19375 at 4199.739 kb on - strand, within PS417_19375
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 4,196,784 + -1.4 4,196,840 + PS417_19365 0.38 +0.2 4,196,841 - PS417_19365 0.38 +0.3 4,196,865 - PS417_19365 0.40 +0.4 4,196,865 - PS417_19365 0.40 -1.4 4,196,868 + PS417_19365 0.40 -0.3 4,196,868 + PS417_19365 0.40 -0.2 4,196,868 + PS417_19365 0.40 +2.3 4,196,868 + PS417_19365 0.40 -0.5 4,196,869 - +0.3 4,196,869 - PS417_19365 0.40 -0.2 4,196,926 - PS417_19365 0.45 -0.1 4,197,352 - PS417_19365 0.77 +2.9 4,197,352 - PS417_19365 0.77 +0.1 4,197,352 - PS417_19365 0.77 -0.2 4,197,356 - PS417_19365 0.77 -1.9 4,197,402 + PS417_19365 0.80 -0.1 4,197,402 + PS417_19365 0.80 -2.1 4,197,913 - PS417_19370 0.19 -3.0 4,198,152 + PS417_19370 0.38 +0.4 4,198,289 - PS417_19370 0.48 +1.3 4,198,550 - PS417_19370 0.69 +0.6 4,198,569 + PS417_19370 0.70 -0.3 4,198,570 - PS417_19370 0.70 +1.4 4,198,673 - PS417_19370 0.78 +0.7 4,198,930 + -0.5 4,198,994 + +0.7 4,199,047 + +0.2 4,199,048 - -0.4 4,199,401 - PS417_19375 0.37 +1.5 4,199,401 - PS417_19375 0.37 +0.2 4,199,738 + PS417_19375 0.75 +0.1 4,199,738 + PS417_19375 0.75 +0.7 4,199,738 + PS417_19375 0.75 +0.9 4,199,738 + PS417_19375 0.75 -3.3 4,199,738 + PS417_19375 0.75 +1.6 4,199,739 - PS417_19375 0.75 -1.1 4,199,739 - PS417_19375 0.75 +0.0 4,199,739 - PS417_19375 0.75 -0.3 4,199,739 - PS417_19375 0.75 +2.8 4,199,739 - PS417_19375 0.75 -1.2
Or see this region's nucleotide sequence