Strain Fitness in Pseudomonas simiae WCS417 around PS417_18485

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18475 and PS417_18480 are separated by 7 nucleotidesPS417_18480 and PS417_18485 overlap by 4 nucleotidesPS417_18485 and PS417_18490 are separated by 215 nucleotidesPS417_18490 and PS417_18495 overlap by 4 nucleotides PS417_18475: PS417_18475 - Pyrrolidone-carboxylate peptidase, at 4,016,642 to 4,017,283 _18475 PS417_18480: PS417_18480 - permease, at 4,017,291 to 4,018,241 _18480 PS417_18485: PS417_18485 - membrane protein, at 4,018,238 to 4,018,954 _18485 PS417_18490: PS417_18490 - hypothetical protein, at 4,019,170 to 4,019,418 _18490 PS417_18495: PS417_18495 - hypothetical protein, at 4,019,415 to 4,019,876 _18495 Position (kb) 4018 4019Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4017.272 kb on + strandat 4017.312 kb on + strandat 4017.312 kb on + strandat 4017.313 kb on - strandat 4017.317 kb on + strandat 4017.496 kb on + strand, within PS417_18480at 4017.594 kb on + strand, within PS417_18480at 4017.595 kb on - strand, within PS417_18480at 4017.598 kb on + strand, within PS417_18480at 4017.598 kb on + strand, within PS417_18480at 4017.599 kb on - strand, within PS417_18480at 4017.599 kb on - strand, within PS417_18480at 4017.599 kb on - strand, within PS417_18480at 4017.599 kb on - strandat 4017.599 kb on - strandat 4017.599 kb on - strand, within PS417_18480at 4017.635 kb on + strand, within PS417_18480at 4017.637 kb on + strand, within PS417_18480at 4017.637 kb on + strand, within PS417_18480at 4017.637 kb on + strand, within PS417_18480at 4017.637 kb on + strand, within PS417_18480at 4017.638 kb on - strand, within PS417_18480at 4017.638 kb on - strandat 4017.638 kb on - strand, within PS417_18480at 4017.638 kb on - strand, within PS417_18480at 4017.638 kb on - strand, within PS417_18480at 4017.690 kb on + strand, within PS417_18480at 4017.956 kb on + strand, within PS417_18480at 4017.956 kb on + strand, within PS417_18480at 4017.956 kb on + strand, within PS417_18480at 4017.957 kb on - strand, within PS417_18480at 4017.957 kb on - strand, within PS417_18480at 4017.957 kb on - strand, within PS417_18480at 4018.194 kb on + strandat 4018.217 kb on - strandat 4018.222 kb on + strandat 4018.223 kb on - strandat 4018.235 kb on + strandat 4018.644 kb on + strand, within PS417_18485at 4018.644 kb on + strand, within PS417_18485at 4018.644 kb on + strand, within PS417_18485at 4018.645 kb on - strand, within PS417_18485at 4018.645 kb on - strand, within PS417_18485at 4018.645 kb on - strand, within PS417_18485at 4018.916 kb on + strandat 4018.968 kb on + strandat 4018.969 kb on - strandat 4019.051 kb on + strandat 4019.355 kb on + strand, within PS417_18490at 4019.355 kb on + strand, within PS417_18490at 4019.356 kb on - strand, within PS417_18490at 4019.416 kb on + strandat 4019.512 kb on + strand, within PS417_18495at 4019.598 kb on + strand, within PS417_18495at 4019.633 kb on - strand, within PS417_18495at 4019.832 kb on + strandat 4019.833 kb on - strandat 4019.833 kb on - strandat 4019.833 kb on - strandat 4019.843 kb on + strandat 4019.870 kb on + strandat 4019.871 kb on - strandat 4019.871 kb on - strandat 4019.914 kb on + strandat 4019.914 kb on + strandat 4019.933 kb on + strandat 4019.953 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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4,017,272 + -0.4
4,017,312 + -1.5
4,017,312 + -0.1
4,017,313 - +1.6
4,017,317 + -1.7
4,017,496 + PS417_18480 0.22 -0.2
4,017,594 + PS417_18480 0.32 +0.1
4,017,595 - PS417_18480 0.32 +0.3
4,017,598 + PS417_18480 0.32 +0.8
4,017,598 + PS417_18480 0.32 +0.8
4,017,599 - PS417_18480 0.32 +0.7
4,017,599 - PS417_18480 0.32 +0.4
4,017,599 - PS417_18480 0.32 +2.5
4,017,599 - +3.9
4,017,599 - -0.1
4,017,599 - PS417_18480 0.32 +1.3
4,017,635 + PS417_18480 0.36 +0.1
4,017,637 + PS417_18480 0.36 +0.0
4,017,637 + PS417_18480 0.36 -4.6
4,017,637 + PS417_18480 0.36 +0.7
4,017,637 + PS417_18480 0.36 -0.9
4,017,638 - PS417_18480 0.36 +0.3
4,017,638 - +3.3
4,017,638 - PS417_18480 0.36 +0.1
4,017,638 - PS417_18480 0.36 -0.2
4,017,638 - PS417_18480 0.36 -0.2
4,017,690 + PS417_18480 0.42 +0.2
4,017,956 + PS417_18480 0.70 -0.7
4,017,956 + PS417_18480 0.70 -0.3
4,017,956 + PS417_18480 0.70 +0.5
4,017,957 - PS417_18480 0.70 +0.4
4,017,957 - PS417_18480 0.70 -2.9
4,017,957 - PS417_18480 0.70 -1.6
4,018,194 + -0.0
4,018,217 - -0.2
4,018,222 + -0.5
4,018,223 - -0.6
4,018,235 + -0.7
4,018,644 + PS417_18485 0.57 -1.0
4,018,644 + PS417_18485 0.57 -3.2
4,018,644 + PS417_18485 0.57 -0.4
4,018,645 - PS417_18485 0.57 +1.1
4,018,645 - PS417_18485 0.57 -1.4
4,018,645 - PS417_18485 0.57 +1.2
4,018,916 + -0.1
4,018,968 + +0.9
4,018,969 - -2.0
4,019,051 + -0.9
4,019,355 + PS417_18490 0.74 +0.0
4,019,355 + PS417_18490 0.74 -1.5
4,019,356 - PS417_18490 0.75 -2.7
4,019,416 + -0.6
4,019,512 + PS417_18495 0.21 -1.7
4,019,598 + PS417_18495 0.40 -0.8
4,019,633 - PS417_18495 0.47 +0.5
4,019,832 + -1.2
4,019,833 - -0.2
4,019,833 - +0.5
4,019,833 - -1.1
4,019,843 + +0.9
4,019,870 + +0.6
4,019,871 - +0.6
4,019,871 - +0.2
4,019,914 + +1.5
4,019,914 + +0.5
4,019,933 + +0.2
4,019,953 + +0.4

Or see this region's nucleotide sequence