Strain Fitness in Pseudomonas simiae WCS417 around PS417_17150

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_17145 and PS417_17150 are separated by 28 nucleotidesPS417_17150 and PS417_17155 are separated by 114 nucleotidesPS417_17155 and PS417_17160 overlap by 11 nucleotides PS417_17145: PS417_17145 - 2-aminoethylphosphonate--pyruvate aminotransferase, at 3,743,918 to 3,745,027 _17145 PS417_17150: PS417_17150 - phosphonoacetaldehyde hydrolase, at 3,745,056 to 3,745,883 _17150 PS417_17155: PS417_17155 - cytochrome B561, at 3,745,998 to 3,746,555 _17155 PS417_17160: PS417_17160 - 1-aminocyclopropane-1-carboxylate deaminase, at 3,746,545 to 3,747,429 _17160 Position (kb) 3745 3746Strain fitness (log2 ratio) -2 -1 0 1 2at 3744.608 kb on + strand, within PS417_17145at 3744.608 kb on + strand, within PS417_17145at 3744.608 kb on + strand, within PS417_17145at 3744.609 kb on - strand, within PS417_17145at 3744.609 kb on - strand, within PS417_17145at 3744.654 kb on + strand, within PS417_17145at 3744.654 kb on + strand, within PS417_17145at 3744.655 kb on - strand, within PS417_17145at 3744.719 kb on - strand, within PS417_17145at 3744.726 kb on - strand, within PS417_17145at 3744.864 kb on - strand, within PS417_17145at 3745.062 kb on + strandat 3745.062 kb on + strandat 3745.063 kb on - strandat 3745.063 kb on - strandat 3745.177 kb on + strand, within PS417_17150at 3745.178 kb on - strand, within PS417_17150at 3745.323 kb on + strand, within PS417_17150at 3745.324 kb on - strand, within PS417_17150at 3745.324 kb on - strand, within PS417_17150at 3745.467 kb on - strand, within PS417_17150at 3745.497 kb on + strand, within PS417_17150at 3745.497 kb on + strand, within PS417_17150at 3745.707 kb on + strand, within PS417_17150at 3745.707 kb on + strand, within PS417_17150at 3745.707 kb on + strand, within PS417_17150at 3745.708 kb on - strand, within PS417_17150at 3745.794 kb on + strand, within PS417_17150at 3745.794 kb on + strand, within PS417_17150at 3745.941 kb on - strandat 3746.025 kb on + strandat 3746.082 kb on + strand, within PS417_17155at 3746.083 kb on - strand, within PS417_17155at 3746.083 kb on - strand, within PS417_17155at 3746.099 kb on - strand, within PS417_17155at 3746.361 kb on + strand, within PS417_17155at 3746.666 kb on + strand, within PS417_17160at 3746.667 kb on - strand, within PS417_17160at 3746.785 kb on + strand, within PS417_17160

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Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
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3,744,608 + PS417_17145 0.62 -1.4
3,744,608 + PS417_17145 0.62 -0.6
3,744,608 + PS417_17145 0.62 -1.2
3,744,609 - PS417_17145 0.62 -0.4
3,744,609 - PS417_17145 0.62 -1.4
3,744,654 + PS417_17145 0.66 +0.6
3,744,654 + PS417_17145 0.66 +2.1
3,744,655 - PS417_17145 0.66 -0.9
3,744,719 - PS417_17145 0.72 +1.5
3,744,726 - PS417_17145 0.73 +0.0
3,744,864 - PS417_17145 0.85 +0.3
3,745,062 + +0.3
3,745,062 + +0.3
3,745,063 - -2.6
3,745,063 - -0.1
3,745,177 + PS417_17150 0.15 +0.8
3,745,178 - PS417_17150 0.15 -2.1
3,745,323 + PS417_17150 0.32 -0.4
3,745,324 - PS417_17150 0.32 -0.7
3,745,324 - PS417_17150 0.32 -0.5
3,745,467 - PS417_17150 0.50 +0.0
3,745,497 + PS417_17150 0.53 -1.4
3,745,497 + PS417_17150 0.53 +0.6
3,745,707 + PS417_17150 0.79 -2.2
3,745,707 + PS417_17150 0.79 -0.9
3,745,707 + PS417_17150 0.79 -1.1
3,745,708 - PS417_17150 0.79 -0.2
3,745,794 + PS417_17150 0.89 -1.9
3,745,794 + PS417_17150 0.89 -0.2
3,745,941 - +1.8
3,746,025 + +0.7
3,746,082 + PS417_17155 0.15 -1.3
3,746,083 - PS417_17155 0.15 -1.1
3,746,083 - PS417_17155 0.15 -0.7
3,746,099 - PS417_17155 0.18 +0.8
3,746,361 + PS417_17155 0.65 -1.0
3,746,666 + PS417_17160 0.14 +0.1
3,746,667 - PS417_17160 0.14 -0.0
3,746,785 + PS417_17160 0.27 +1.6

Or see this region's nucleotide sequence