Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_16510 and PS417_16515 are separated by 29 nucleotides PS417_16515 and PS417_16520 are separated by 224 nucleotides PS417_16520 and PS417_16525 are separated by 81 nucleotides
PS417_16510: PS417_16510 - Clp protease ClpX, at 3,606,307 to 3,608,577
_16510
PS417_16515: PS417_16515 - Clp protease ClpS, at 3,608,607 to 3,608,975
_16515
PS417_16520: PS417_16520 - cold-shock protein, at 3,609,200 to 3,609,478
_16520
PS417_16525: PS417_16525 - isocitrate dehydrogenase, at 3,609,560 to 3,610,816
_16525
Position (kb)
3608
3609 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3608.107 kb on - strand at 3608.107 kb on - strand, within PS417_16510 at 3608.169 kb on - strand, within PS417_16510 at 3608.169 kb on - strand, within PS417_16510 at 3608.373 kb on + strand at 3608.374 kb on - strand at 3608.577 kb on + strand at 3608.715 kb on + strand, within PS417_16515 at 3608.749 kb on - strand, within PS417_16515 at 3609.005 kb on - strand at 3609.078 kb on + strand at 3609.079 kb on - strand at 3609.088 kb on - strand at 3609.088 kb on - strand at 3609.128 kb on + strand at 3609.128 kb on + strand at 3609.162 kb on + strand at 3609.162 kb on + strand at 3609.163 kb on - strand at 3609.199 kb on + strand at 3609.200 kb on - strand at 3609.200 kb on - strand at 3609.302 kb on + strand, within PS417_16520 at 3609.302 kb on + strand, within PS417_16520 at 3609.303 kb on - strand, within PS417_16520 at 3609.457 kb on - strand at 3609.561 kb on + strand at 3609.562 kb on - strand at 3609.562 kb on - strand at 3609.565 kb on + strand at 3609.566 kb on - strand at 3609.566 kb on - strand at 3609.623 kb on - strand at 3609.639 kb on + strand at 3609.639 kb on + strand at 3609.639 kb on + strand at 3609.639 kb on + strand at 3609.640 kb on - strand at 3609.640 kb on - strand at 3609.640 kb on - strand at 3609.644 kb on + strand at 3609.644 kb on + strand at 3609.777 kb on + strand, within PS417_16525 at 3609.777 kb on + strand, within PS417_16525 at 3609.790 kb on + strand, within PS417_16525 at 3609.888 kb on + strand, within PS417_16525 at 3609.889 kb on - strand, within PS417_16525 at 3609.939 kb on - strand, within PS417_16525 at 3609.939 kb on - strand, within PS417_16525 at 3609.939 kb on - strand, within PS417_16525
Per-strain Table
Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 remove 3,608,107 - +0.7 3,608,107 - PS417_16510 0.79 -3.3 3,608,169 - PS417_16510 0.82 -1.5 3,608,169 - PS417_16510 0.82 -1.2 3,608,373 + -2.5 3,608,374 - -3.9 3,608,577 + -2.6 3,608,715 + PS417_16515 0.29 -2.9 3,608,749 - PS417_16515 0.38 -1.2 3,609,005 - +1.0 3,609,078 + -1.6 3,609,079 - +1.2 3,609,088 - +0.1 3,609,088 - -1.7 3,609,128 + -0.1 3,609,128 + -2.0 3,609,162 + -1.2 3,609,162 + -0.9 3,609,163 - -1.5 3,609,199 + -0.1 3,609,200 - -0.0 3,609,200 - +2.6 3,609,302 + PS417_16520 0.37 +0.5 3,609,302 + PS417_16520 0.37 -1.4 3,609,303 - PS417_16520 0.37 +0.1 3,609,457 - +2.7 3,609,561 + -1.8 3,609,562 - -1.0 3,609,562 - +0.6 3,609,565 + +0.4 3,609,566 - +0.3 3,609,566 - -3.7 3,609,623 - -1.3 3,609,639 + -0.3 3,609,639 + -0.1 3,609,639 + -1.7 3,609,639 + -0.0 3,609,640 - -0.1 3,609,640 - -0.2 3,609,640 - -0.4 3,609,644 + +0.3 3,609,644 + -2.2 3,609,777 + PS417_16525 0.17 +0.5 3,609,777 + PS417_16525 0.17 -1.4 3,609,790 + PS417_16525 0.18 -2.9 3,609,888 + PS417_16525 0.26 +1.1 3,609,889 - PS417_16525 0.26 -0.2 3,609,939 - PS417_16525 0.30 -0.5 3,609,939 - PS417_16525 0.30 -1.0 3,609,939 - PS417_16525 0.30 -0.8
Or see this region's nucleotide sequence