Strain Fitness in Pseudomonas simiae WCS417 around PS417_16410

Experiment: Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_16400 and PS417_16405 overlap by 17 nucleotidesPS417_16405 and PS417_16410 are separated by 88 nucleotidesPS417_16410 and PS417_16415 are separated by 67 nucleotides PS417_16400: PS417_16400 - NAD(P)H-quinone oxidoreductase, at 3,587,167 to 3,587,781 _16400 PS417_16405: PS417_16405 - membrane protein, at 3,587,765 to 3,588,181 _16405 PS417_16410: PS417_16410 - 3-methyladenine DNA glycosylase, at 3,588,270 to 3,588,941 _16410 PS417_16415: PS417_16415 - tRNA 2-thiocytidine biosynthesis protein TtcA, at 3,589,009 to 3,589,833 _16415 Position (kb) 3588 3589Strain fitness (log2 ratio) -3 -2 -1 0 1at 3587.347 kb on + strand, within PS417_16400at 3587.347 kb on + strand, within PS417_16400at 3587.435 kb on - strand, within PS417_16400at 3587.779 kb on + strandat 3587.880 kb on - strand, within PS417_16405at 3587.880 kb on - strand, within PS417_16405at 3587.880 kb on - strand, within PS417_16405at 3587.880 kb on - strand, within PS417_16405at 3587.882 kb on + strand, within PS417_16405at 3587.882 kb on + strand, within PS417_16405at 3587.882 kb on + strand, within PS417_16405at 3588.023 kb on + strand, within PS417_16405at 3588.051 kb on - strand, within PS417_16405at 3588.079 kb on - strand, within PS417_16405at 3588.125 kb on + strand, within PS417_16405at 3588.125 kb on + strand, within PS417_16405at 3588.126 kb on - strand, within PS417_16405at 3588.126 kb on - strand, within PS417_16405at 3588.285 kb on - strandat 3588.285 kb on - strandat 3588.286 kb on + strandat 3588.932 kb on - strandat 3588.951 kb on + strandat 3588.951 kb on + strandat 3589.532 kb on + strandat 3589.532 kb on + strand, within PS417_16415at 3589.533 kb on - strand, within PS417_16415at 3589.697 kb on + strand, within PS417_16415at 3589.697 kb on + strand, within PS417_16415at 3589.698 kb on - strand, within PS417_16415at 3589.821 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
remove
3,587,347 + PS417_16400 0.29 -2.3
3,587,347 + PS417_16400 0.29 -3.2
3,587,435 - PS417_16400 0.44 -3.3
3,587,779 + +0.7
3,587,880 - PS417_16405 0.28 +0.1
3,587,880 - PS417_16405 0.28 -0.5
3,587,880 - PS417_16405 0.28 +0.2
3,587,880 - PS417_16405 0.28 -0.5
3,587,882 + PS417_16405 0.28 -1.0
3,587,882 + PS417_16405 0.28 -1.7
3,587,882 + PS417_16405 0.28 +0.1
3,588,023 + PS417_16405 0.62 -0.1
3,588,051 - PS417_16405 0.69 +0.2
3,588,079 - PS417_16405 0.75 +0.2
3,588,125 + PS417_16405 0.86 -1.4
3,588,125 + PS417_16405 0.86 +0.0
3,588,126 - PS417_16405 0.87 -0.9
3,588,126 - PS417_16405 0.87 +0.1
3,588,285 - -0.3
3,588,285 - -1.6
3,588,286 + -0.1
3,588,932 - -1.2
3,588,951 + -0.9
3,588,951 + +1.7
3,589,532 + -1.5
3,589,532 + PS417_16415 0.63 +0.8
3,589,533 - PS417_16415 0.64 +0.4
3,589,697 + PS417_16415 0.83 -0.2
3,589,697 + PS417_16415 0.83 -1.3
3,589,698 - PS417_16415 0.84 -0.5
3,589,821 + +1.0

Or see this region's nucleotide sequence